RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 ARID3BQ8IVW6 561 aaPredicted RBP13.85□□□□□ -0.19
COL28A1-206ENST00000465339 MFSD6LQ8IWD5 586 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 TRIM59Q8IWR1 403 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 SIX5Q8N196 739 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 DEPDC1BQ8WUY9 529 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 MRPS31Q92665 395 aaKnown RBP13.85□□□□□ -0.19
COL28A1-206ENST00000465339 SMARCD1Q96GM5 515 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 SHDQ96IW2 340 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 ZNF518BQ9C0D4 1074 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 MFSD1Q9H3U5 465 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 OBP2AQ9NY56 170 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 ANAPC1Q9H1A4 1944 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 ZDBF2Q9HCK1 2354 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 F8VP50 259 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 CLDN5O00501 218 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 DPYSL4O14531 572 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 CD58P19256 250 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 ERCC5P28715 1186 aaPredicted RBP13.84□□□□□ -0.19
COL28A1-206ENST00000465339 VIPR2P41587 438 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 PPP3CCP48454 512 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 CLCN5P51795 746 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 CYP4F8P98187 520 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 PAQR9Q6ZVX9 377 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 FAM35AQ86V20 835 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 MON1AQ86VX9 555 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 CMTM8Q8IZV2 173 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 FUKQ8N0W3 1084 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 MAB21L3Q8N8X9 362 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 STKLD1Q8NE28 680 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 WHAMMQ8TF30 809 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 TATDN2Q93075 761 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 TTLL2Q9BWV7 592 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 SLC46A2Q9BY10 475 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 TRPV5Q9NQA5 729 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 CISHQ9NSE2 258 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 HMGXB4Q9UGU5 601 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 HCN4Q9Y3Q4 1203 aa13.84□□□□□ -0.19
COL28A1-206ENST00000465339 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL28A1-206ENST00000465339 ZNF318Q5VUA4 2279 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 HEPACAM2A8MVW5 462 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 RTN3O95197 1032 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 PDGFBP01127 241 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 AFPP02771 609 aaKnown RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 TBXAS1P24557 533 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 AVPR2P30518 371 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 AVPR1AP37288 418 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 YWHAEP62258 255 aaKnown RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 PRKCQQ04759 706 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 KCNH2Q12809 1159 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 TPD52L1Q16890 204 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 SLC44A4Q53GD3 710 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 VITQ6UXI7 678 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 YAF2Q8IY57 180 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 NUP93Q8N1F7 819 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 CELF5Q8N6W0 485 aaKnown RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 C12orf29Q8N999 325 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 GPT2Q8TD30 523 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 SLC2A14Q8TDB8 520 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 DNASE1L2Q92874 299 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 IRF7Q92985 503 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 CYFIP2Q96F07 1278 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 HNRNPABQ99729 332 aaKnown RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 KCNH6Q9H252 994 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 BRD9Q9H8M2 597 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 CSNK1G1Q9HCP0 422 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 DMAP1Q9NPF5 467 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 ARHGEF3Q9NR81 526 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 COMMD8Q9NX08 183 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 TRPM5Q9NZQ8 1165 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 CA14Q9ULX7 337 aa13.83□□□□□ -0.2
COL28A1-206ENST00000465339 ARIH1Q9Y4X5 557 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-206ENST00000465339 KRBA1A5PL33 1030 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 ZNF263O14978 683 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 AP1G2O75843 785 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 MBD3O95983 291 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 CCDC130P13994 396 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 NPR3P17342 541 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 PFKLP17858 780 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 GDI1P31150 447 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 PDE6CP51160 858 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 CACNA2D1P54289 1103 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 STARD6P59095 220 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 USP46P62068 366 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 FCHO2Q0JRZ9 810 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 ORC1Q13415 861 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 CUL2Q13617 745 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 GRM2Q14416 872 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 DPCR1Q3MIW9 517 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 ARSIQ5FYB1 569 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 TXNDC8Q6A555 127 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 PHLDB3Q6NSJ2 640 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 EHBP1Q8NDI1 1231 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 FLCNQ8NFG4 579 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 TMEM176AQ96HP8 235 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 HEXIM2Q96MH2 286 aaKnown RBP13.82□□□□□ -0.2
COL28A1-206ENST00000465339 NT5C1BQ96P26 610 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 SLITRK1Q96PX8 696 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 MED15Q96RN5 788 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 TWNKQ96RR1 684 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 KCNK16Q96T55 309 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms