RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CCDC127Q96BQ5 260 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 TTLL2Q9BWV7 592 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 GZF1Q9H116 711 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-204ENST00000462475 DPEP3Q9H4B8 488 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 SMOC1Q9H4F8 434 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 SDK1Q7Z5N4 2213 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 F8VP50 259 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 LEFTY2O00292 366 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 TNNI1P19237 187 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 ANXA13P27216 316 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 CASP1P29466 404 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 CACNA2D1P54289 1103 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 CYP24A1Q07973 514 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 EHHADHQ08426 723 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 PSMD2Q13200 908 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 DMC1Q14565 340 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 PSMD6Q15008 389 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 CNNM4Q6P4Q7 775 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 SYT13Q7L8C5 426 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 C12orf50Q8NA57 414 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-204ENST00000462475 SCFD1Q8WVM8 642 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 ACDQ96AP0 544 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 CEP295NLQ96MC4 621 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 FNBP1Q96RU3 617 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 SNX25Q9H3E2 840 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 TMEM30AQ9NV96 361 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 TRPM5Q9NZQ8 1165 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 UBE4BO95155 1302 aa17.18■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF840PA6NDX5 716 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ANTXRLA6NF34 631 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 SCAMP3O14828 347 aaKnown RBP17.17■□□□□ 0.34
COL7A1-204ENST00000462475 TRIM66O15016 1216 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 DCLK1O15075 740 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 CUTAO60888 179 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 TACC1O75410 805 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 YEATS4O95619 227 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 NFATC1O95644 943 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 APBB3O95704 486 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF806P0C7X5 589 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 KCNA4P22459 653 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 GNL1P36915 607 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-204ENST00000462475 OPRD1P41143 372 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 PDE6CP51160 858 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 AMPD3Q01432 767 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 GAB4Q2WGN9 574 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 PLK5Q496M5 336 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 PLA2G2CQ5R387 149 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 FOXD4L5Q5VV16 416 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-204ENST00000462475 UNC13DQ70J99 1090 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 HS2ST1Q7LGA3 356 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 IQUBQ8NA54 791 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 OR6B3Q8NGW1 331 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 FOXD4L4Q8WXT5 416 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ZC3H10Q96K80 434 aaKnown RBP17.17■□□□□ 0.34
COL7A1-204ENST00000462475 C8orf48Q96LL4 319 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF396Q96N95 335 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-204ENST00000462475 C7orf25Q9BPX7 421 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF518BQ9C0D4 1074 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 BLZF1Q9H2G9 400 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ATG2BQ96BY7 2078 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 ANAPC1Q9H1A4 1944 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 LAMA1P25391 3075 aa17.17■□□□□ 0.34
COL7A1-204ENST00000462475 CHD8Q9HCK8 2581 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 GREB1Q4ZG55 1949 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 OLFM2O95897 454 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 PFKLP17858 780 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 MPLP40238 635 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 LIMK1P53667 647 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 MYL6P60660 151 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 TNNC1P63316 161 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 NOP14P78316 857 aaKnown RBP17.16■□□□□ 0.34
COL7A1-204ENST00000462475 SLC7A9P82251 487 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 NR1H3Q13133 447 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 WDR72Q3MJ13 1102 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 IL31Q6EBC2 164 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 XXYLT1Q8NBI6 393 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF516Q92618 1163 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 RNF38Q9H0F5 515 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 DUSP15Q9H1R2 295 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-204ENST00000462475 SMPD4Q9NXE4 827 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 PCDHGA5Q9Y5G8 931 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 CPQQ9Y646 472 aa17.16■□□□□ 0.34
COL7A1-204ENST00000462475 PTPRDP23468 1912 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 ZFHX4Q86UP3 3567 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 CACNA1BQ00975 2339 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 EML5Q05BV3 1969 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 CLDN5O00501 218 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 POLR2DO15514 142 aaKnown RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 ABL1P00519 1130 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 OAS1P00973 400 aaKnown RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 CYP17A1P05093 508 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 PTPN1P18031 435 aaKnown RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 SEC13P55735 322 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 IFRD2Q12894 506 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 TAF10Q12962 218 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 BMT2Q1RMZ1 405 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 FOXD4L6Q3SYB3 417 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 TCEAL6Q6IPX3 200 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 FOXD4L3Q6VB84 417 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 FILIP1Q7Z7B0 1213 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms