RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 MTF2Q9Y483 593 aaPredicted RBP24.44■■□□□ 1.5
PTPN4-208ENST00000460289 TRAV19A0A0A6YYK7 116 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 USP17L7P0C7H9 530 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 PDE6CP51160 858 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 INCA1Q0VD86 236 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 ANGPT1Q15389 498 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 SMARCD1Q96GM5 515 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 CEP63Q96MT8 703 aa24.43■■□□□ 1.5
PTPN4-208ENST00000460289 C8orf33Q9H7E9 229 aaPredicted RBP24.43■■□□□ 1.5
PTPN4-208ENST00000460289 NUP210Q8TEM1 1887 aaPredicted RBP24.43■■□□□ 1.5
PTPN4-208ENST00000460289 BICDL2A1A5D9 508 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 RTN3O95197 1032 aaPredicted RBP24.42■■□□□ 1.5
PTPN4-208ENST00000460289 CD44P16070 742 aaKnown RBP24.42■■□□□ 1.5
PTPN4-208ENST00000460289 PFKLP17858 780 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 KPNA1P52294 538 aaPredicted RBP24.42■■□□□ 1.5
PTPN4-208ENST00000460289 CACNA2D1P54289 1103 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 USP46P62068 366 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 DCAF17Q5H9S7 520 aaPredicted RBP24.42■■□□□ 1.5
PTPN4-208ENST00000460289 WDR44Q5JSH3 913 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 FOXR2Q6PJQ5 311 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 PAQR9Q6ZVX9 377 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 FILIP1Q7Z7B0 1213 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 FAM35AQ86V20 835 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 NUP93Q8N1F7 819 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 TTC39CQ8N584 583 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 FAM3CQ92520 227 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 SLITRK1Q96PX8 696 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 NT5C1AQ9BXI3 368 aa24.42■■□□□ 1.5
PTPN4-208ENST00000460289 PPP1R3GB7ZBB8 358 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 BIN1O00499 593 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 LRRN2O75325 713 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 CKMP06732 381 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 HDCP19113 662 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 BMP6P22004 513 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 KLHL10Q6JEL2 608 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 CC2D1AQ6P1N0 951 aaPredicted RBP24.41■■□□□ 1.5
PTPN4-208ENST00000460289 FRMD5Q7Z6J6 570 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 FUKQ8N0W3 1084 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 CLDN23Q96B33 292 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 ZFYVE19Q96K21 471 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 CYP2S1Q96SQ9 504 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 DMAP1Q9NPF5 467 aaPredicted RBP24.41■■□□□ 1.5
PTPN4-208ENST00000460289 TMEM30AQ9NV96 361 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 CCL26Q9Y258 94 aa24.41■■□□□ 1.5
PTPN4-208ENST00000460289 PTPRDP23468 1912 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 SHISA7A6NL88 538 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 TARSP26639 723 aaKnown RBP24.4■■□□□ 1.5
PTPN4-208ENST00000460289 YWHAQP27348 245 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 HOXD11P31277 338 aaPredicted RBP24.4■■□□□ 1.5
PTPN4-208ENST00000460289 RPS9P46781 194 aaKnown RBP24.4■■□□□ 1.5
PTPN4-208ENST00000460289 C1orf210Q8IVY1 113 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 TRIML1Q8N9V2 468 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 SLC2A14Q8TDB8 520 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 NELFBQ8WX92 580 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 SEMA4DQ92854 862 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 KCNK16Q96T55 309 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 FAM124BQ9H5Z6 455 aaPredicted RBP24.4■■□□□ 1.5
PTPN4-208ENST00000460289 GKN1Q9NS71 199 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 COMMD8Q9NX08 183 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 GCNT4Q9P109 453 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 HMGXB4Q9UGU5 601 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 CACNA1HO95180 2353 aa24.4■■□□□ 1.5
PTPN4-208ENST00000460289 DENND4CQ5VZ89 1909 aa24.39■■□□□ 1.5
PTPN4-208ENST00000460289 C2orf78A6NCI8 922 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 AP1G2O75843 785 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 CD58P19256 250 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 TAF10Q12962 218 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 ORC1Q13415 861 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 RALGPS2Q86X27 583 aaPredicted RBP24.39■■□□□ 1.49
PTPN4-208ENST00000460289 ARL14EPQ8N8R7 260 aaPredicted RBP24.39■■□□□ 1.49
PTPN4-208ENST00000460289 SLC35C1Q96A29 364 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 SLC22A12Q96S37 553 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 FAM83CQ9BQN1 747 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 KRT82Q9NSB4 513 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 FAM86C1Q9NVL1 165 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 GTSE1Q9NYZ3 720 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 KIAA1468Q9P260 1216 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 NDRG2Q9UN36 371 aaKnown RBP24.39■■□□□ 1.49
PTPN4-208ENST00000460289 COQ4Q9Y3A0 265 aa24.39■■□□□ 1.49
PTPN4-208ENST00000460289 ZNF840PA6NDX5 716 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CILPO75339 1184 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CCDC130P13994 396 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CAMK4Q16566 473 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 ITPRIPL2Q3MIP1 535 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CCDC40Q4G0X9 1142 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CBWD6Q4V339 395 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CBWD3Q5JTY5 395 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CBWD5Q5RIA9 395 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 TTI2Q6NXR4 508 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 ALYREFQ86V81 257 aaKnown RBP24.38■■□□□ 1.49
PTPN4-208ENST00000460289 C12orf29Q8N999 325 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 PDZD8Q8NEN9 1154 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 OVCA2Q8WZ82 227 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CYFIP2Q96F07 1278 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 HNRNPABQ99729 332 aaKnown RBP24.38■■□□□ 1.49
PTPN4-208ENST00000460289 DUSP9Q99956 384 aaKnown RBP24.38■■□□□ 1.49
PTPN4-208ENST00000460289 CSNK1G1Q9HCP0 422 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 FAM49BQ9NUQ9 324 aa24.38■■□□□ 1.49
PTPN4-208ENST00000460289 SPECC1L-ADORA2AF8WAN1 911 aa24.37■■□□□ 1.49
PTPN4-208ENST00000460289 ABL1P00519 1130 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms