RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 SOX9P48436 509 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 PPP3CCP48454 512 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 NDST1P52848 882 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 NOP14P78316 857 aaKnown RBP16.49■□□□□ 0.23
LIMS1-210ENST00000449684 PPP3CAQ08209 521 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 LRRC32Q14392 662 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ZNF268Q14587 947 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-210ENST00000449684 PPP2R5DQ14738 602 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ITPRIPL2Q3MIP1 535 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ZCWPW2Q504Y3 356 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 C1orf220Q5T0J3 134 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 KRT39Q6A163 491 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ISM2Q6H9L7 571 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 UNC93AQ86WB7 457 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 RALGPS2Q86X27 583 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-210ENST00000449684 NUP93Q8N1F7 819 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ARL14EPQ8N8R7 260 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-210ENST00000449684 CLDN23Q96B33 292 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 CYP2S1Q96SQ9 504 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 SDCBP2Q9H190 292 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 F5P12259 2224 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 PROB1E7EW31 1015 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 PSMA7O14818 248 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 TADA3O75528 432 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 AP1G2O75843 785 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 RTN3O95197 1032 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-210ENST00000449684 SP9P0CG40 484 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 MXI1P50539 228 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 USP46P62068 366 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 FKBP3Q00688 224 aaKnown RBP16.48■□□□□ 0.23
LIMS1-210ENST00000449684 AMPD2Q01433 879 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 CSTF1Q05048 431 aaKnown RBP16.48■□□□□ 0.23
LIMS1-210ENST00000449684 TNK2Q07912 1038 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 DCAF17Q5H9S7 520 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-210ENST00000449684 WDR44Q5JSH3 913 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 FAM35AQ86V20 835 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 TAS1R2Q8TE23 839 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 SMARCD1Q96GM5 515 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 NIF3L1Q9GZT8 377 aa16.48■□□□□ 0.23
LIMS1-210ENST00000449684 ZFHX2Q9C0A1 2572 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-210ENST00000449684 C2orf78A6NCI8 922 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 CD58P19256 250 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 YWHAQP27348 245 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 CTHP32929 405 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 PPP1R2P41236 205 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 ASPAP45381 313 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 IFNAR2P48551 515 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 LRRC63Q05C16 580 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 TAF10Q12962 218 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 ORC1Q13415 861 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 RUNX3Q13761 415 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 MTF1Q14872 753 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 PDGFRLQ15198 375 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 COBLL1Q53SF7 1204 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 ANKRD40Q6AI12 368 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 TRIM68Q6AZZ1 485 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 ELOA2Q8IYF1 753 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-210ENST00000449684 FBXO32Q969P5 355 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 EXOC4Q96A65 974 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 TTLL2Q9BWV7 592 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 EBF3Q9H4W6 596 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 CYP3A43Q9HB55 503 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 DMAP1Q9NPF5 467 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-210ENST00000449684 KRT82Q9NSB4 513 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 FAM49BQ9NUQ9 324 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 DUS2Q9NX74 493 aaKnown RBP16.47■□□□□ 0.23
LIMS1-210ENST00000449684 FBXO4Q9UKT5 387 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 R4GN57 208 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 DENND4CQ5VZ89 1909 aa16.47■□□□□ 0.23
LIMS1-210ENST00000449684 SHISA7A6NL88 538 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 SLC16A3O15427 465 aaKnown RBP16.46■□□□□ 0.23
LIMS1-210ENST00000449684 CCDC130P13994 396 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 PFKLP17858 780 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 CACNA2D1P54289 1103 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 PON2Q15165 354 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 DGKKQ5KSL6 1271 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 KLHL10Q6JEL2 608 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 ADSSL1Q8N142 457 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 CRYBG2Q8N1P7 616 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 CPA6Q8N4T0 437 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 FBXL13Q8NEE6 735 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 PDZD8Q8NEN9 1154 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 SPATA20Q8TB22 786 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 SLC2A14Q8TDB8 520 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 SH3RF2Q8TEC5 729 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 SLC22A12Q96S37 553 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 KCNK16Q96T55 309 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 IER2Q9BTL4 223 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 NT5C1AQ9BXI3 368 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 SEMA4AQ9H3S1 761 aa16.46■□□□□ 0.23
LIMS1-210ENST00000449684 PTPRDP23468 1912 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ZNF840PA6NDX5 716 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 GADD45BO75293 160 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-210ENST00000449684 CHRNB1P11230 501 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ADORA2BP29275 332 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 MTAPQ13126 283 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 NR1H3Q13133 447 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 FZD5Q13467 585 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ZNF528Q3MIS6 628 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 TXNDC11Q6PKC3 985 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms