RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 INCA1Q0VD86 236 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 FOXR2Q6PJQ5 311 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 TPRG1Q6ZUI0 275 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 FRMD5Q7Z6J6 570 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 FAM35AQ86V20 835 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 CCDC105Q8IYK2 499 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 CELF5Q8N6W0 485 aaKnown RBP13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 TRIML1Q8N9V2 468 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 PJA1Q8NG27 643 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 BPIFB1Q8TDL5 484 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 WHAMMQ8TF30 809 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 SLC35C1Q96A29 364 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 ZFYVE19Q96K21 471 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 CEP63Q96MT8 703 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 TWNKQ96RR1 684 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 SLC22A12Q96S37 553 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 MED10Q9BTT4 135 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 TTLL2Q9BWV7 592 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 METTL14Q9HCE5 456 aaKnown RBP13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 CCL26Q9Y258 94 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 COQ4Q9Y3A0 265 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 BICDL2A1A5D9 508 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 C2orf78A6NCI8 922 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 FAM170BA6NMN3 283 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 CILPO75339 1184 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 BEST1O76090 585 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 GLULP15104 373 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 CD58P19256 250 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 AVPR1AP37288 418 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 PTPN5P54829 565 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 PAK1Q13153 545 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 UBXN2BQ14CS0 331 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 ARHGAP29Q52LW3 1261 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 WDR44Q5JSH3 913 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 NUP93Q8N1F7 819 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 DTWD2Q8NBA8 298 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 SLC2A14Q8TDB8 520 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 SMARCD1Q96GM5 515 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 FAXDC2Q96IV6 333 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 NELL2Q99435 816 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 NT5C1AQ9BXI3 368 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 TRPC7Q9HCX4 862 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 FAM49BQ9NUQ9 324 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 TDP1Q9NUW8 608 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 EHD2Q9NZN4 543 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 GCNT4Q9P109 453 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 DLGAP2Q9P1A6 1054 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 ATP8B3O60423 1300 aa13.53□□□□□ -0.24
PRPF40A-203ENST00000448428 TRAV19A0A0A6YYK7 116 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 H0Y858 1186 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 AP1G2O75843 785 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 USP17L7P0C7H9 530 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 HDCP19113 662 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 FMO5P49326 533 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 IFRD2Q12894 506 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 TAF10Q12962 218 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 FZD5Q13467 585 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 ZNF268Q14587 947 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 CCDC40Q4G0X9 1142 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 ZNF852Q6ZMS4 543 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 ARL14EPQ8N8R7 260 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 ZMIZ2Q8NF64 920 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 SCAMP5Q8TAC9 235 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 RIN3Q8TB24 985 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 CSGALNACT1Q8TDX6 532 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 CYFIP2Q96F07 1278 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 HNRNPABQ99729 332 aaKnown RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 SMOQ99835 787 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 ARID3AQ99856 593 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 SRRTQ9BXP5 876 aaKnown RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 OSBPL6Q9BZF3 934 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 CLSTN2Q9H4D0 955 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 LTB4R2Q9NPC1 389 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 DMAP1Q9NPF5 467 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 GKN1Q9NS71 199 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 KRT82Q9NSB4 513 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 LMBRD1Q9NUN5 540 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 THG1LQ9NWX6 298 aaKnown RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 IL37Q9NZH6 218 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 TRPM5Q9NZQ8 1165 aa13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 HELZP42694 1942 aaKnown RBP13.52□□□□□ -0.25
PRPF40A-203ENST00000448428 ZNF840PA6NDX5 716 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 MAN2B1O00754 1011 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 TNFRSF10BO14763 440 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 RTN3O95197 1032 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 TARSP26639 723 aaKnown RBP13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 YWHAQP27348 245 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 ADORA2BP29275 332 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 PPP3CCP48454 512 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 MLLT6P55198 1093 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 MAP3K7CLP57077 242 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 TNK2Q07912 1038 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 ZNF394Q53GI3 561 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 ZNF687Q8N1G0 1237 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 TTC8Q8TAM2 541 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 MED15Q96RN5 788 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 FAM83CQ9BQN1 747 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 KIF9Q9HAQ2 790 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 CSNK1G1Q9HCP0 422 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 CISHQ9NSE2 258 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms