RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 BATF3Q9NR55 127 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 DNAJC25-GNG10A0A024R161 153 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 SIGLEC16A6NMB1 481 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 MSCO60682 206 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 KRT7P08729 469 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 TSHRP16473 764 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ADRA1DP25100 572 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 IL1R2P27930 398 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 RFC1P35251 1148 aaPredicted RBP17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 RPL22P35268 128 aaKnown RBP17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 PSMC4P43686 418 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ASPAP45381 313 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 DYNLT1P63172 113 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 NAA25Q14CX7 972 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 MAPK6Q16659 721 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 DENND1BQ6P3S1 775 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ZBTB33Q86T24 672 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF276Q8N554 614 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 MRPL4Q9BYD3 311 aaKnown RBP17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ADAM33Q9BZ11 813 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 SAE1Q9UBE0 346 aaPredicted RBP17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 SMAPO00193 183 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 TM9SF1O15321 606 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 CST8O60676 142 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 WEE2P0C1S8 567 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 GCLCP48506 637 aaPredicted RBP17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 CCNA1P78396 465 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 DUOXA2Q1HG44 320 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKRD20A2Q5SQ80 823 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKRD20A1Q5TYW2 823 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKRD20A3Q5VUR7 823 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 FYB2Q5VWT5 728 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 EEPD1Q7L9B9 569 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 NLRP9Q7RTR0 991 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 SAPCD2Q86UD0 394 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 RHPN2Q8IUC4 686 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 THNSL1Q8IYQ7 743 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 FBXO36Q8NEA4 188 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 JOSD2Q8TAC2 188 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 DCAKDQ8WVC6 231 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKRD27Q96NW4 1050 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 C10orf88Q9H8K7 445 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 ZWILCHQ9H900 591 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 RNPEPL1Q9HAU8 725 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 SUFUQ9UMX1 484 aa17.17■□□□□ 0.34
CLCNKA-203ENST00000439316 LRRC37A2A6NM11 1700 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 ABLIM1O14639 778 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 OGTO15294 1046 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 PEX11AO75192 247 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 TMEM63AO94886 807 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 KDELR1P24390 212 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 EFNA5P52803 228 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 YWHAEP62258 255 aaKnown RBP17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 SURF1Q15526 300 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 HADHQ16836 314 aaKnown RBP17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 SMTNL2Q2TAL5 461 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 CDCA2Q69YH5 1023 aaPredicted RBP17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 SCARA5Q6ZMJ2 495 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 RASAL3Q86YV0 1011 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 BANPQ8N9N5 519 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 FAM13CQ8NE31 585 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 ALKBH8Q96BT7 664 aaKnown RBP17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 PARK7Q99497 189 aaKnown RBP17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 TBC1D10AQ9BXI6 508 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 XYLT2Q9H1B5 865 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 LHX5Q9H2C1 402 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 CPSF3Q9UKF6 684 aaKnown RBP17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 PLXNB2O15031 1838 aa17.16■□□□□ 0.34
CLCNKA-203ENST00000439316 MAFO75444 373 aaPredicted RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 CBX6O95503 412 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 HOXC6P09630 235 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 KRT3P12035 628 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 GNAZP19086 355 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 UBA1P22314 1058 aaKnown RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 POLR2BP30876 1174 aaKnown RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 RASSF2P50749 326 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TRPC3Q13507 836 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF699Q32M78 642 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 C3orf62Q6ZUJ4 267 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 BZW1Q7L1Q6 419 aaKnown RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 KIAA0319LQ8IZA0 1049 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 RSAD2Q8WXG1 361 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 ACO2Q99798 780 aaKnown RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TLE6Q9H808 572 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 NPHS2Q9NP85 383 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 SAR1AQ9NR31 198 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 NRBP2Q9NSY0 501 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 NKX1-2Q9UD57 310 aaPredicted RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TJP2Q9UDY2 1190 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 CYTH4Q9UIA0 394 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 LNPEPQ9UIQ6 1025 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 ZFP69BQ9UJL9 534 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 PLXNA1Q9UIW2 1896 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TCRBV7S3A2A0A539 114 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TROVE2P10155 538 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TAF1BQ53T94 588 aaPredicted RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 KCNT1Q5JUK3 1230 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF449Q6P9G9 518 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 LONP2Q86WA8 852 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 TCP10LQ8TDR4 215 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms