RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KIAA1586Q9HCI6 787 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 KBTBD4Q9NVX7 518 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 TRPM5Q9NZQ8 1165 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 UBE4BO95155 1302 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 SOBPA7XYQ1 873 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 F8VP50 259 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 SCAMP3O14828 347 aaKnown RBP15.49■□□□□ 0.07
SDC1-204ENST00000429035 TRIM66O15016 1216 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 CUTAO60888 179 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 PPP6R2O75170 966 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 NFATC1O95644 943 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 HOXA6P31267 233 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 HOXD13P35453 343 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 PDE6CP51160 858 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 USP46P62068 366 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 NR1H3Q13133 447 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 TRPC3Q13507 836 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 EML3Q32P44 896 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 FBXO43Q4G163 708 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 IQUBQ8NA54 791 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 ACDQ96AP0 544 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 CNTNAP3BQ96NU0 1288 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 CNTNAP3Q9BZ76 1288 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 SMOC1Q9H4F8 434 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 SMPD4Q9NXE4 827 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 GCNT4Q9P109 453 aa15.49■□□□□ 0.07
SDC1-204ENST00000429035 NXF1Q9UBU9 619 aaKnown RBP15.49■□□□□ 0.07
SDC1-204ENST00000429035 THADAQ6YHU6 1953 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 POLR2DO15514 142 aaKnown RBP15.48■□□□□ 0.07
SDC1-204ENST00000429035 PHACTR2O75167 634 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 EPN2O95208 641 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 YEATS4O95619 227 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 HSP90AA1P07900 732 aaKnown RBP15.48■□□□□ 0.07
SDC1-204ENST00000429035 CYP24A1Q07973 514 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 BIRC3Q13489 604 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 DMC1Q14565 340 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 PSMD6Q15008 389 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 SHC4Q6S5L8 630 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 SCARA5Q6ZMJ2 495 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 UNC13DQ70J99 1090 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 TTC30AQ86WT1 665 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 XXYLT1Q8NBI6 393 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 SPATA17Q96L03 361 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 DPEP3Q9H4B8 488 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 SLC39A2Q9NP94 309 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 ARHGAP26Q9UNA1 814 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 NUP205Q92621 2012 aa15.48■□□□□ 0.07
SDC1-204ENST00000429035 A8MXQ7 604 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 LEFTY2O00292 366 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 CLDN5O00501 218 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 TGFB1I1O43294 461 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 APBB3O95704 486 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 GBP1P32455 592 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 GNL1P36915 607 aaPredicted RBP15.47■□□□□ 0.07
SDC1-204ENST00000429035 AFMP43652 599 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 DGKEP52429 567 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 WDR72Q3MJ13 1102 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 EPM2AIP1Q7L775 607 aaPredicted RBP15.47■□□□□ 0.07
SDC1-204ENST00000429035 MYCBPAPQ8TBZ2 947 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 ZNF507Q8TCN5 953 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 SCFD1Q8WVM8 642 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 MED10Q9BTT4 135 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 ZNF518BQ9C0D4 1074 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 LINC00597Q9H2U6 94 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 FAM13BQ9NYF5 915 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 EHD2Q9NZN4 543 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 NME7Q9Y5B8 376 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 CPQQ9Y646 472 aa15.47■□□□□ 0.07
SDC1-204ENST00000429035 TPRP12270 2363 aaKnown RBP15.47■□□□□ 0.07
SDC1-204ENST00000429035 CCDC163A0A0D9SF12 145 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 FOXD2O60548 495 aaPredicted RBP15.46■□□□□ 0.07
SDC1-204ENST00000429035 EXOC3O60645 756 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 CST3P01034 146 aaPredicted RBP15.46■□□□□ 0.07
SDC1-204ENST00000429035 MBL2P11226 248 aaPredicted RBP15.46■□□□□ 0.07
SDC1-204ENST00000429035 MPLP40238 635 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 RAP1GAPP47736 663 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 ME1P48163 572 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 CASP4P49662 377 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 CACNA2D1P54289 1103 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 MYL6P60660 151 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 ELF2Q15723 593 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 TDRD10Q5VZ19 366 aaKnown RBP15.46■□□□□ 0.07
SDC1-204ENST00000429035 FILIP1Q7Z7B0 1213 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 HSCBQ8IWL3 235 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 GRAMD1CQ8IYS0 662 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 CAMKK1Q8N5S9 505 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 TSTD1Q8NFU3 115 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 EZH1Q92800 747 aaPredicted RBP15.46■□□□□ 0.07
SDC1-204ENST00000429035 SLITRK1Q96PX8 696 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 C7orf25Q9BPX7 421 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 TPSD1Q9BZJ3 242 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 ELOVL4Q9GZR5 314 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 SMYD3Q9H7B4 428 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 MAGEF1Q9HAY2 307 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 CIZ1Q9ULV3 898 aaPredicted RBP15.46■□□□□ 0.07
SDC1-204ENST00000429035 INVSQ9Y283 1065 aa15.46■□□□□ 0.07
SDC1-204ENST00000429035 DCLK1O15075 740 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 TACC1O75410 805 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 ADRB1P08588 477 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 PTPN1P18031 435 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms