RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 TCRBV9S1A1TA0A576 114 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 C3orf70A6NLC5 250 aaPredicted RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 NDC80O14777 642 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 RNASEH1O60930 286 aaKnown RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 PDIK1LQ8N165 341 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 DRAXINQ8NBI3 349 aaPredicted RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 ZNF606Q8WXB4 792 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 SPATA16Q9BXB7 569 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 ZWILCHQ9H900 591 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 DMAP1Q9NPF5 467 aaPredicted RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 MARCOQ9UEW3 520 aaPredicted RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 CCDC195A0A1B0GUA6 201 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 CST8O60676 142 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 CIB2O75838 187 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 TM7SF2O76062 418 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 KITP10721 976 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 EIF2AK2P19525 551 aaKnown RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 GARTP22102 1010 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 ACTR3P61158 418 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 BASP1P80723 227 aaKnown RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 KCNT1Q5JUK3 1230 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 DACT2Q5SW24 774 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 ARID3BQ8IVW6 561 aaPredicted RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 SMC1BQ8NDV3 1235 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 RSAD2Q8WXG1 361 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 UBE2OQ9C0C9 1292 aaKnown RBP22.22■■□□□ 1.15
USP48-205ENST00000421625 TCEAL9Q9UHQ7 104 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 IKBKGQ9Y6K9 419 aa22.22■■□□□ 1.15
USP48-205ENST00000421625 TCRBV5S1A1TA0A578 114 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 H0YIN7 160 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 NPM3O75607 178 aaKnown RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 DYNC1I2Q13409 638 aaKnown RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 C1orf146Q5VVC0 180 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 RAPH1Q70E73 1250 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 SLC44A1Q8WWI5 657 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 SRPK1Q96SB4 655 aaKnown RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 NTPCRQ9BSD7 190 aaKnown RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 OCEL1Q9H607 264 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 POLIQ9UNA4 740 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 ZNF541Q9H0D2 1346 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 KAT6AQ92794 2004 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 KBTBD13C9JR72 458 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 INHBAP08476 426 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 ETS2P15036 469 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 AP2B1P63010 937 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 PSMD6Q15008 389 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 TRMT5Q32P41 509 aaKnown RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 CYP4A22Q5TCH4 519 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 NIPA1Q7RTP0 329 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 PRPF39Q86UA1 669 aaKnown RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 SESTD1Q86VW0 696 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 SAMD3Q8N6K7 520 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 MRIQ9BWK5 157 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 GLIS2Q9BZE0 524 aaPredicted RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 EBF3Q9H4W6 596 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 ANKEF1Q9NU02 776 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 SYNPO2Q9UMS6 1093 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 SRCAPQ6ZRS2 3230 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 EXTL3O43909 919 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 CRABP2P29373 138 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 CLDN10P78369 228 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 ZNF200P98182 395 aaPredicted RBP22.21■■□□□ 1.15
USP48-205ENST00000421625 BST1Q10588 318 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 FAM71DQ8N9W8 422 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 CEP170P1Q96L14 293 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 TBC1D22BQ9NU19 505 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 IRAK4Q9NWZ3 460 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 KCNK4Q9NYG8 393 aa22.21■■□□□ 1.15
USP48-205ENST00000421625 SCN9AQ15858 1988 aa22.2■■□□□ 1.15
USP48-205ENST00000421625 IL1BP01584 269 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 PODNQ7Z5L7 613 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 ACAP3Q96P50 834 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 HOMER2Q9NSB8 354 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 DDX56Q9NY93 547 aaKnown RBP22.2■■□□□ 1.14
USP48-205ENST00000421625 COL11A2P13942 1736 aaPredicted RBP22.2■■□□□ 1.14
USP48-205ENST00000421625 MEI4A8MW99 385 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 SPECC1L-ADORA2AF8WAN1 911 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 COPEO14579 308 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 MYCLP12524 364 aaPredicted RBP22.2■■□□□ 1.14
USP48-205ENST00000421625 ALDH18A1P54886 795 aaKnown RBP22.2■■□□□ 1.14
USP48-205ENST00000421625 YWHAGP61981 247 aaKnown RBP eCLIP22.2■■□□□ 1.14
USP48-205ENST00000421625 LIN52Q52LA3 116 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 ZBTB41Q5SVQ8 909 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 ARMC3Q5W041 872 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 TAGLN3Q9UI15 199 aa22.2■■□□□ 1.14
USP48-205ENST00000421625 CD48P09326 243 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 CDK7P50613 346 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 C6orf163Q5TEZ5 329 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 CLEC4DQ8WXI8 215 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 MTBPQ96DY7 904 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 PRMT6Q96LA8 375 aaPredicted RBP22.19■■□□□ 1.14
USP48-205ENST00000421625 IQCGQ9H095 443 aaKnown RBP22.19■■□□□ 1.14
USP48-205ENST00000421625 WDR64B1ANS9 1081 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 BUD23O43709 281 aaKnown RBP22.19■■□□□ 1.14
USP48-205ENST00000421625 PYGLP06737 847 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 TMPRSS15P98073 1019 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 LRRC36Q1X8D7 754 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 NDNQ99608 321 aa22.19■■□□□ 1.14
USP48-205ENST00000421625 SPDYE2BA6NHP3 402 aa22.18■■□□□ 1.14
USP48-205ENST00000421625 PRR5-ARHGAP8B1AHC4 643 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms