RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 TAF2Q6P1X5 1199 aa18.32■□□□□ 0.52
SMPD4-202ENST00000409031 IRF2BP1Q8IU81 584 aa18.32■□□□□ 0.52
SMPD4-202ENST00000409031 AGAP3Q96P47 875 aa18.32■□□□□ 0.52
SMPD4-202ENST00000409031 TMEM109Q9BVC6 243 aa18.32■□□□□ 0.52
SMPD4-202ENST00000409031 SLCO1B3Q9NPD5 702 aa18.32■□□□□ 0.52
SMPD4-202ENST00000409031 MTTPP55157 894 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ACVR2BQ13705 512 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 DMC1Q14565 340 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 CCDC85BQ15834 202 aaPredicted RBP18.31■□□□□ 0.52
SMPD4-202ENST00000409031 C6orf10Q5SRN2 563 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 GPAT2Q6NUI2 795 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 C4orf50Q6ZRC1 276 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 PIGWQ7Z7B1 504 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ASAP3Q8TDY4 903 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 TLCD1Q96CP7 247 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 FAM167AQ96KS9 214 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 C2orf40Q9H1Z8 148 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 RBAK-RBAKDNI3L0D1 243 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 CLOCKO15516 846 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 LYNP07948 512 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 LRRC55Q6ZSA7 311 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 RTKN2Q8IZC4 609 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 PTPRN2Q92932 1015 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 GLMNQ92990 594 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ZNF669Q96BR6 464 aaPredicted RBP18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ULK4Q96C45 1275 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 PNMA5Q96PV4 448 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 LRRC19Q9H756 370 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 DMTF1Q9Y222 760 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ZCCHC11Q5TAX3 1644 aaKnown RBP18.31■□□□□ 0.52
SMPD4-202ENST00000409031 HEATR9A2RTY3 570 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 PPEF1O14829 653 aaPredicted RBP18.31■□□□□ 0.52
SMPD4-202ENST00000409031 MYL4P12829 197 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 FLT3P36888 993 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 KCNK10P57789 538 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 CIAPIN1Q6FI81 312 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ACTL9Q8TC94 416 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 IL1RL2Q9HB29 575 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 GSNP06396 782 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 SLC1A6P48664 564 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 RFWD2Q8NHY2 731 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 PSPC1Q8WXF1 523 aaKnown RBP18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ITFG2Q969R8 447 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 CHST7Q9NS84 486 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 BLOC1S4Q9NUP1 217 aa18.31■□□□□ 0.52
SMPD4-202ENST00000409031 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.31■□□□□ 0.52
SMPD4-202ENST00000409031 ADCY6O43306 1168 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 CLASP2O75122 1294 aaKnown RBP18.3■□□□□ 0.52
SMPD4-202ENST00000409031 SLC4A1P02730 911 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 UQCRBP14927 111 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 FASP25445 335 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 ACOT2P49753 483 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 SWSAP1Q6NVH7 229 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 CDC26Q8NHZ8 85 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 TUBGCP3Q96CW5 907 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 PI4K2AQ9BTU6 479 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 RSL24D1Q9UHA3 163 aaKnown RBP18.3■□□□□ 0.52
SMPD4-202ENST00000409031 FEM1BQ9UK73 627 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 SLC39A10Q9ULF5 831 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 E2F8A0AVK6 867 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 GSC2O15499 205 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 PHGDHO43175 533 aaKnown RBP18.3■□□□□ 0.52
SMPD4-202ENST00000409031 CCDC130P13994 396 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 GTF2H1P32780 548 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 FDFT1P37268 417 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 CLEC16AQ2KHT3 1053 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 WDR72Q3MJ13 1102 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 RIT2Q99578 217 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 R3HDM2Q9Y2K5 976 aaKnown RBP18.3■□□□□ 0.52
SMPD4-202ENST00000409031 UMODL1Q5DID0 1318 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 CAMSAP1Q5T5Y3 1602 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 LCA5LO95447 670 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 RASGEF1CQ8N431 466 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 TRPC4APQ8TEL6 797 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 ZFYVE19Q96K21 471 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.3■□□□□ 0.52
SMPD4-202ENST00000409031 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.3■□□□□ 0.52
SMPD4-202ENST00000409031 SLC12A4Q9UP95 1085 aa18.3■□□□□ 0.52
SMPD4-202ENST00000409031 FOXR2Q6PJQ5 311 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 CCDC81Q6ZN84 652 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 ECHDC2Q86YB7 292 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 PPHLN1Q8NEY8 458 aaKnown RBP18.29■□□□□ 0.52
SMPD4-202ENST00000409031 CALML6Q8TD86 181 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 SH3TC2Q8TF17 1288 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 TMEM165Q9HC07 324 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 ARHGEF3Q9NR81 526 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 TIMM44O43615 452 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 MUTP22033 750 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 ELK3P41970 407 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 CDK7P50613 346 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 COL9A3Q14050 684 aaPredicted RBP18.29■□□□□ 0.52
SMPD4-202ENST00000409031 SLC47A2Q86VL8 602 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 GIPC3Q8TF64 312 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 ZNF335Q9H4Z2 1342 aaPredicted RBP18.29■□□□□ 0.52
SMPD4-202ENST00000409031 TNS3Q68CZ2 1445 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 EFNA5P52803 228 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 GJC2Q5T442 439 aaPredicted RBP18.29■□□□□ 0.52
SMPD4-202ENST00000409031 CDRT15Q96T59 188 aa18.29■□□□□ 0.52
SMPD4-202ENST00000409031 COPS7BQ9H9Q2 264 aaPredicted RBP18.29■□□□□ 0.52
SMPD4-202ENST00000409031 C6orf203Q9P0P8 240 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms