RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PYCARDQ9ULZ3 195 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 ADGRG1Q9Y653 693 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 F8VP50 259 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 PRRG1O14668 218 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 TRIM66O15016 1216 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 CCDC175P0C221 793 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 HAPLN1P10915 354 aaPredicted RBP19.07■□□□□ 0.64
SDC1-203ENST00000403076 ABCB4P21439 1286 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 TUFMP49411 452 aaKnown RBP19.07■□□□□ 0.64
SDC1-203ENST00000403076 CACNA2D1P54289 1103 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 RPL10AP62906 217 aaKnown RBP19.07■□□□□ 0.64
SDC1-203ENST00000403076 PMF1Q6P1K2 205 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 MMS22LQ6ZRQ5 1243 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 TXLNBQ8N3L3 684 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 LRRC4Q9HBW1 653 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 NENFQ9UMX5 172 aa19.07■□□□□ 0.64
SDC1-203ENST00000403076 MYH10P35580 1976 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 PIK3R2O00459 728 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 TGM5O43548 720 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 VNN2O95498 520 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 GLUD1P00367 558 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 CALB1P05937 261 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 SPATA31D3P0C874 917 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 PLA2G4AP47712 749 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 GALCP54803 685 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 DDR2Q16832 855 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 C2CD6Q53TS8 623 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 LIN9Q5TKA1 542 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 SPATA31D4Q6ZUB0 917 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 PHF13Q86YI8 300 aaPredicted RBP19.06■□□□□ 0.64
SDC1-203ENST00000403076 MCOLN2Q8IZK6 566 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 TTC9BQ8N6N2 239 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 ZMIZ2Q8NF64 920 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 STK32AQ8WU08 396 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 C18orf8Q96DM3 657 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 HSFY1Q96LI6 401 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 C8orf48Q96LL4 319 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 CPXM1Q96SM3 734 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 PACSIN1Q9BY11 444 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 MIS12Q9H081 205 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 CSNK1G1Q9HCP0 422 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 TMEM30AQ9NV96 361 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 MAFFQ9ULX9 164 aa19.06■□□□□ 0.64
SDC1-203ENST00000403076 ANKRD62A6NC57 917 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 SOAT2O75908 522 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 SEC24AO95486 1093 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 LCP1P13796 627 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 MMP8P22894 467 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 ACADSBP45954 432 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 C1QBPQ07021 282 aaKnown RBP19.05■□□□□ 0.64
SDC1-203ENST00000403076 PTPN20Q4JDL3 420 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 SDHAF4Q5VUM1 108 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 RBM23Q86U06 439 aaKnown RBP19.05■□□□□ 0.64
SDC1-203ENST00000403076 CTNNBL1Q8WYA6 563 aaPredicted RBP19.05■□□□□ 0.64
SDC1-203ENST00000403076 ZNF653Q96CK0 615 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 TRIM11Q96F44 468 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 SLC4A5Q9BY07 1137 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 UBXN6Q9BZV1 441 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 CRISPLD1Q9H336 500 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 PPP2R2CQ9Y2T4 447 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 REXO2Q9Y3B8 237 aaKnown RBP19.05■□□□□ 0.64
SDC1-203ENST00000403076 TRIOBPQ9H2D6 2365 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 E5RJQ4 531 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 ZSCAN12O43309 604 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 ALDH1A3P47895 512 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 GPR15P49685 360 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 VAV2P52735 878 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 CYP4A22Q5TCH4 519 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 OR6B2Q6IFH4 312 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 MON1BQ7L1V2 547 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 PHLDB2Q86SQ0 1253 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 TCEAL8Q8IYN2 117 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 SIX6OS1Q8N1H7 587 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 KCTD13Q8WZ19 329 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 PPP2R3CQ969Q6 453 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 MRPL38Q96DV4 380 aaKnown RBP19.05■□□□□ 0.64
SDC1-203ENST00000403076 VCPIP1Q96JH7 1222 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 TLE6Q9H808 572 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 CYLDQ9NQC7 956 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 MYO1AQ9UBC5 1043 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 HSFX1Q9UBD0 423 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 STRIP2Q9ULQ0 834 aa19.05■□□□□ 0.64
SDC1-203ENST00000403076 MYO9BQ13459 2157 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 PER2O15055 1255 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 CLASP2O75122 1294 aaKnown RBP19.04■□□□□ 0.64
SDC1-203ENST00000403076 ERBB2P04626 1255 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 MYBL1P10243 752 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 TKTL1P51854 596 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 GPC5P78333 572 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 IFRD2Q12894 506 aaPredicted RBP19.04■□□□□ 0.64
SDC1-203ENST00000403076 LILRA6Q6PI73 481 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 CCDC149Q6ZUS6 474 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 KREMEN2Q8NCW0 462 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 THAP2Q9H0W7 228 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 PNPLA8Q9NP80 782 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 TJP2Q9UDY2 1190 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 CNOT8Q9UFF9 292 aaKnown RBP19.04■□□□□ 0.64
SDC1-203ENST00000403076 INTUQ9ULD6 942 aa19.04■□□□□ 0.64
SDC1-203ENST00000403076 MYO7AQ13402 2215 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 TMEM265A0A087WTH1 108 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms