RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CASP10Q92851 521 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 LRRC1Q9BTT6 524 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 BCO2Q9BYV7 579 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 RHOBTB2Q9BYZ6 727 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 NIF3L1Q9GZT8 377 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 RBM12Q9NTZ6 932 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 SEPT11Q9NVA2 429 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 DZANK1Q9NVP4 752 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 TRANK1O15050 2925 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 GBF1Q92538 1859 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 KCNK3O14649 394 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 ZMYND10O75800 440 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 ABLIM3O94929 683 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 PAPLNO95428 1278 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 IGFBP6P24592 240 aaPredicted RBP10.79□□□□□ -0.68
VPS53-202ENST00000389040 GNL1P36915 607 aaPredicted RBP10.79□□□□□ -0.68
VPS53-202ENST00000389040 MFAP3P55082 362 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 TSPY1Q01534 308 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 KCNC3Q14003 757 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 CASP8Q14790 479 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 CTC1Q2NKJ3 1217 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 TCEAL5Q5H9L2 206 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 LILRA6Q6PI73 481 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 PALB2Q86YC2 1186 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 SLC20A1Q8WUM9 679 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 RFFLQ8WZ73 363 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 SEMA4DQ92854 862 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 KAT5Q92993 513 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 PABPC5Q96DU9 382 aaKnown RBP10.79□□□□□ -0.68
VPS53-202ENST00000389040 TNIP3Q96KP6 325 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 CEP295NLQ96MC4 621 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 SNX25Q9H3E2 840 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 GOLPH3Q9H4A6 298 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 NXF1Q9UBU9 619 aaKnown RBP10.79□□□□□ -0.68
VPS53-202ENST00000389040 CDH9Q9ULB4 789 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 COG5Q9UP83 839 aa10.79□□□□□ -0.68
VPS53-202ENST00000389040 I3L4J1 428 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 C2CD2LO14523 706 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 CLASP2O75122 1294 aaKnown RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 GLUD1P00367 558 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 POU2F2P09086 479 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 ATF2P15336 505 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 ABCB4P21439 1286 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 HOXA9P31269 272 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 OR1D2P34982 312 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 USP8P40818 1118 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 NRIP1P48552 1158 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 CLCN4P51793 760 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 INCA1Q0VD86 236 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 HYAL1Q12794 435 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 ADAM15Q13444 863 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 GLE1Q53GS7 698 aaKnown RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 C8orf74Q6P047 294 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 CCNI2Q6ZMN8 369 aaPredicted RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 CCDC149Q6ZUS6 474 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 PEX26Q7Z412 305 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 DAAM2Q86T65 1068 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 FAM71AQ8IYT1 594 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 PPM1KQ8N3J5 372 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 SLC35G2Q8TBE7 412 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 SLC22A17Q8WUG5 538 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 PBKQ96KB5 322 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 KREMEN1Q96MU8 473 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 NT5C1BQ96P26 610 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 AFF4Q9UHB7 1163 aaKnown RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 CDY1Q9Y6F8 540 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 ANKRD62A6NC57 917 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 OAS2P29728 719 aaKnown RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 CA8P35219 290 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 ASPAP45381 313 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 GPS2Q13227 327 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 PRSS55Q6UWB4 352 aaPredicted RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 CRYBG2Q8N1P7 616 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 EPS8L1Q8TE68 723 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 KBTBD7Q8WVZ9 684 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 SHC3Q92529 594 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 FUBP3Q96I24 572 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS53-202ENST00000389040 ZCWPW1Q9H0M4 648 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 OSGEPQ9NPF4 335 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.78□□□□□ -0.681e-6■■■■■ 243.8
VPS53-202ENST00000389040 DDX43Q9NXZ2 648 aaKnown RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 TAS2R14Q9NYV8 317 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 STIM2Q9P246 746 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 KIAA1257Q9ULG3 409 aa10.78□□□□□ -0.68
VPS53-202ENST00000389040 BARX2Q9UMQ3 279 aaPredicted RBP10.78□□□□□ -0.68
VPS53-202ENST00000389040 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 ELF1P32519 619 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 TUFMP49411 452 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 CUL2Q13617 745 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 PUS10Q3MIT2 529 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 FAM171BQ6P995 826 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 NOP9Q86U38 636 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 NT5DC3Q86UY8 548 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 TCEAL8Q8IYN2 117 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 MICALL1Q8N3F8 863 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 CMASQ8NFW8 434 aaPredicted RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 OR6B3Q8NGW1 331 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 SPPL2BQ8TCT7 592 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 ACTRT1Q8TDG2 376 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 ARHGEF26Q96DR7 871 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms