RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 DPP3Q9NY33 737 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 ADAMTS1Q9UHI8 967 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 NUB1Q9Y5A7 615 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 DOCK8Q8NF50 2099 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 WDR27A2RRH5 827 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 CCDC188H7C350 402 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 HCRTO43612 131 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 SEC24AO95486 1093 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 CYP3A5P20815 502 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 ARPP19P56211 112 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 NTHL1P78549 312 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 TFAMQ00059 246 aaKnown RBP13.13□□□□□ -0.31
VRK3-202ENST00000377011 CUL1Q13616 776 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 CCDC142Q17RM4 750 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 POTEHQ6S545 545 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 ZNF571Q7Z3V5 609 aaPredicted RBP13.13□□□□□ -0.31
VRK3-202ENST00000377011 SLFN11Q7Z7L1 901 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 C10orf67Q8IYJ2 551 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 LRRC57Q8N9N7 239 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 KREMEN2Q8NCW0 462 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 SLC35C1Q96A29 364 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 RTP3Q9BQQ7 232 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 MTMR12Q9C0I1 747 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 CRISPLD1Q9H336 500 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 SMOC2Q9H3U7 446 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 ASB7Q9H672 318 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 NAGPAQ9UK23 515 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 FBXW11Q9UKB1 542 aa13.13□□□□□ -0.31
VRK3-202ENST00000377011 CCDC195A0A1B0GUA6 201 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 SRRM3A6NNA2 597 aaPredicted RBP13.12□□□□□ -0.31
VRK3-202ENST00000377011 BHMG1C9JSJ3 638 aaPredicted RBP13.12□□□□□ -0.31
VRK3-202ENST00000377011 M0QZQ0 153 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 FTCDO95954 541 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 CCDC172P0C7W6 258 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 RFX1P22670 979 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 SSTR3P32745 418 aaPredicted RBP13.12□□□□□ -0.31
VRK3-202ENST00000377011 ABCD1P33897 745 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 SLC7A5Q01650 507 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 ROR1Q01973 937 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 MYBPC2Q14324 1141 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 KYAT1Q16773 422 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 ALKBH5Q6P6C2 394 aaKnown RBP13.12□□□□□ -0.31
VRK3-202ENST00000377011 LRIG3Q6UXM1 1119 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 GPR149Q86SP6 731 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 IQCKQ8N0W5 287 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 ZNF516Q92618 1163 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 GDAP1L1Q96MZ0 367 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 PSMB7Q99436 277 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 CAPS2Q9BXY5 557 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 SIX2Q9NPC8 291 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 LCMT1Q9UIC8 334 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 C2CD2Q9Y426 696 aa13.12□□□□□ -0.31
VRK3-202ENST00000377011 C2CD4DB7Z1M9 353 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 LOC730098B7Z3J9 87 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 AKAP3O75969 853 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 ITGB3P05106 788 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 GLI1P08151 1106 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 H2AFZP0C0S5 128 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 HOXB8P17481 243 aaPredicted RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 SLC9A1P19634 815 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 POLR2BP30876 1174 aaKnown RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 PSMC2P35998 433 aaKnown RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 ELAVL2Q12926 359 aaKnown RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 RAB33AQ14088 237 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 PUS10Q3MIT2 529 aaKnown RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 CFAP58Q5T655 872 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 H2AFVQ71UI9 128 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 RASGEF1CQ8N431 466 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 TSEN2Q8NCE0 465 aaKnown RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 BEST2Q8NFU1 509 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 OR10T2Q8NGX3 314 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 MS4A14Q96JA4 679 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 SENP8Q96LD8 212 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 PHF7Q9BWX1 381 aaPredicted RBP13.11□□□□□ -0.31
VRK3-202ENST00000377011 ISCUQ9H1K1 167 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 EPB41L5Q9HCM4 733 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 C11orf16Q9NQ32 467 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.11□□□□□ -0.31
VRK3-202ENST00000377011 HCFC1R1Q9NWW0 138 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 STK39Q9UEW8 545 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 RSPH14Q9UHP6 348 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 MUTYHQ9UIF7 546 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 PCDHB8Q9UN66 801 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 BACE2Q9Y5Z0 518 aa13.11□□□□□ -0.31
VRK3-202ENST00000377011 PGRMC1O00264 195 aaKnown RBP13.1□□□□□ -0.31
VRK3-202ENST00000377011 EIF3HO15372 352 aaKnown RBP eCLIP13.1□□□□□ -0.31
VRK3-202ENST00000377011 CST3P01034 146 aaPredicted RBP13.1□□□□□ -0.31
VRK3-202ENST00000377011 KCNA4P22459 653 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 HSPA9P38646 679 aaKnown RBP13.1□□□□□ -0.31
VRK3-202ENST00000377011 STAT1P42224 750 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 IRAK1P51617 712 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 DLG4P78352 724 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 GUCY2DQ02846 1103 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 PPP2R5EQ16537 467 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 SNRNP35Q16560 246 aaKnown RBP13.1□□□□□ -0.31
VRK3-202ENST00000377011 CTXN3Q4LDR2 81 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 SLC8B1Q6J4K2 584 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 RNF19BQ6ZMZ0 732 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 GPR65Q8IYL9 337 aa13.1□□□□□ -0.31
VRK3-202ENST00000377011 TTC9BQ8N6N2 239 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms