RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PTPN4P29074 926 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 MIPP30301 263 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 SKIV2L2P42285 1042 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 RGS7P49802 495 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 EN1Q05925 392 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 CCDC15Q0P6D6 951 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 STXBP2Q15833 593 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 WDR78Q5VTH9 848 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 PRPF39Q86UA1 669 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ALYREFQ86V81 257 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 SLC35B2Q8TB61 432 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 CADM1Q9BY67 442 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ACAD9Q9H845 621 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 HACL1Q9UJ83 578 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ENO1P06733 434 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 STAT5BP51692 787 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 CLDN10P78369 228 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 KDSRQ06136 332 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 LY6KQ17RY6 165 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 MAB21L3Q8N8X9 362 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 NKD2Q969F2 451 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 TEPSINQ96N21 525 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 PIH1D1Q9NWS0 290 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 KANSL3Q9P2N6 904 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ZNF214Q9UL59 606 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 TRIM49D1C9J1S8 452 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 M0QYV0 167 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 CYB561D2O14569 222 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 MAGEB2O15479 319 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PRKCBP05771 671 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 CXCL8P10145 99 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 MXRA7P84157 204 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 KLHL38Q2WGJ6 581 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PPP6R3Q5H9R7 873 aaPredicted RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 DLK2Q6UY11 383 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 TDRPQ86YL5 185 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PDCD7Q8N8D1 485 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 NAT8LQ8N9F0 302 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 NETO2Q8NC67 525 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ZNF280CQ8ND82 737 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ARMC2Q8NEN0 867 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 DHX33Q9H6R0 707 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 NR2E3Q9Y5X4 410 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 SNCAIPQ9Y6H5 919 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 WDR81Q562E7 1941 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 TCRBV9S1A1TA0A576 114 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 E2F8A0AVK6 867 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 MAFGO15525 162 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 KCNN4O15554 427 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ADCY3O60266 1144 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 UGT1A9O60656 530 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ERBB2P04626 1255 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 APRTP07741 180 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 POLR2BP30876 1174 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ZNF200P98182 395 aaPredicted RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 DPYSL3Q14195 570 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 SGSM1Q2NKQ1 1148 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PARP6Q2NL67 630 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 OR6B2Q6IFH4 312 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 CCDC62Q6P9F0 684 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 BRSK2Q8IWQ3 736 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 DCAKDQ8WVC6 231 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 CDHR1Q96JP9 859 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 HEXIM2Q96MH2 286 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 CYTH2Q99418 400 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ADPGKQ9BRR6 497 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 TEX13BQ9BXU2 312 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 ACSS3Q9H6R3 686 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 SMYD3Q9H7B4 428 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 UGT1A7Q9HAW7 530 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 UGT1A10Q9HAW8 530 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 UGT1A8Q9HAW9 530 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 NGRNQ9NPE2 291 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 RNF19AQ9NV58 838 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 MAP3K20Q9NYL2 800 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PPARGC1AQ9UBK2 798 aaKnown RBP12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PGAP2Q9UHJ9 254 aa12.68□□□□□ -0.38
CLIP3-201ENST00000360535 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 SPATA31C2B4DYI2 1134 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 C2CD2LO14523 706 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 COPEO14579 308 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TOP3BO95985 862 aaKnown RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TNNC2P02585 160 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 KRT7P08729 469 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TMPRSS15P98073 1019 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 SLC45A4Q5BKX6 768 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 BSPRYQ5W0U4 402 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ADGRD1Q6QNK2 874 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 RINLQ6ZS11 566 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ZCCHC23Q6ZST2 131 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 PCGF5Q86SE9 256 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 RILPQ96NA2 401 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ACAP3Q96P50 834 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TWNKQ96RR1 684 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 MRPL4Q9BYD3 311 aaKnown RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 FARP1Q9Y4F1 1045 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 AFG3L2Q9Y4W6 797 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 E5RJQ4 531 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 CAPN9O14815 690 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms