RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NUDT5Q9UKK9 219 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NENFQ9UMX5 172 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CUL9Q8IWT3 2517 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 H3BQ06 376 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 AP1G2O75843 785 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TBX18O95935 607 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CYP1A1P04798 512 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 FYNP06241 537 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TFE3P19532 575 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 PRKCIP41743 596 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PITX1P78337 314 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 CDR2Q01850 454 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 KLHL30Q0D2K2 578 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ELAVL2Q12926 359 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 SMC1AQ14683 1233 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 SLC5A9Q2M3M2 681 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CTC1Q2NKJ3 1217 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 MGAT5BQ3V5L5 792 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CFAP221Q4G0U5 840 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NAA35Q5VZE5 725 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 METTL23Q86XA0 190 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 SCN4BQ8IWT1 228 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ANKRD52Q8NB46 1076 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 KREMEN2Q8NCW0 462 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 FAXDC2Q96IV6 333 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 SLC22A12Q96S37 553 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 SEPT5Q99719 369 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 LRRC3Q9BY71 257 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 DUSP16Q9BY84 665 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 MAGEB5Q9BZ81 275 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NMUR1Q9HB89 426 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NGRNQ9NPE2 291 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 TRIM10Q9UDY6 481 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 DSEQ9UL01 958 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 GREB1Q4ZG55 1949 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 E5RJQ4 531 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 M0QYV0 167 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CCL16O15467 120 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PAPSS1O43252 624 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 MOSPD3O75425 235 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 GRAP2O75791 330 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ERBB2P04626 1255 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TPM3P06753 285 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PAEPP09466 180 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 HAPLN1P10915 354 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 VDRP11473 427 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 P4HA1P13674 534 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 FECHP22830 423 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PCSK1P29120 753 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NOMO3P69849 1222 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TFF2Q03403 129 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 UBE3AQ05086 875 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TWF1Q12792 350 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 IFRD2Q12894 506 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 CBX2Q14781 532 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 DUSP6Q16828 381 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 SGO2Q562F6 1265 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 SH3PXD2AQ5TCZ1 1133 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ARHGAP17Q68EM7 881 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 GAREM2Q75VX8 874 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ENOSF1Q7L5Y1 443 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PPFIBP1Q86W92 1011 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 THEM5Q8N1Q8 247 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ACRBPQ8NEB7 543 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PPP1R9BQ96SB3 815 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CYP2S1Q96SQ9 504 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NUP58Q9BVL2 599 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 LACRTQ9GZZ8 138 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 MAN1C1Q9NR34 630 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 FBXW11Q9UKB1 542 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIG4-201ENST00000356922 ZNF638Q14966 1978 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 MTCL1Q9Y4B5 1905 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 C2orf16Q68DN1 1984 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 CCDC195A0A1B0GUA6 201 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 OR6C75A6NL08 312 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TADA3O75528 432 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 C8AP07357 584 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 FAM163BP0C2L3 166 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 USP17L7P0C7H9 530 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 GRIK1P39086 918 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ADAM15Q13444 863 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 BMS1Q14692 1282 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 SCD5Q86SK9 330 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TCEAL8Q8IYN2 117 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 RIN3Q8TB24 985 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ARHGEF26Q96DR7 871 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 P2RY11Q96G91 374 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TNIP3Q96KP6 325 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ZSWIM3Q96MP5 696 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 EDEM3Q9BZQ6 932 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 MIS12Q9H081 205 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 IL21Q9HBE4 155 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 DNMT3BQ9UBC3 853 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 AFF4Q9UHB7 1163 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 NAGPAQ9UK23 515 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 RWDD3Q9Y3V2 267 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TCRBV5S1A1TA0A578 114 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms