RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 CERS4Q9HA82 394 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 GPATCH2LQ9NWQ4 482 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 USH1CQ9Y6N9 552 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 IFT172Q9UG01 1749 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 POLBP06746 335 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 SCNN1GP51170 649 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 CCDC60Q8IWA6 550 aaPredicted RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 NKX2-3Q8TAU0 364 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 LPPQ93052 612 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 SCAMP3O14828 347 aaKnown RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 MTSS1O43312 755 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 PYGLP06737 847 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 CCDC130P13994 396 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 NR1I3Q14994 352 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 SELENONQ9NZV5 590 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 NEU2Q9Y3R4 380 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 HES2Q9Y543 173 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 F9P00740 461 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 RFC1P35251 1148 aaPredicted RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 RHBDL3P58872 404 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 LRRC14Q15048 493 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 PKN1Q16512 942 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 PRR23CQ6ZRP0 262 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 SMARCD1Q96GM5 515 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 NT5MQ9NPB1 228 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 ZSCAN9O15535 394 aaPredicted RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 MEFVO15553 781 aaPredicted RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 CD52P31358 61 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 CLNS1AP54105 237 aaKnown RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 TBX4P57082 545 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 BST2Q10589 180 aaKnown RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 OTOP2Q7RTS6 562 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 ASPSCR1Q9BZE9 553 aa14.03□□□□□ -0.16
RFFL-201ENST00000315249 UXTQ9UBK9 157 aaPredicted RBP14.03□□□□□ -0.16
RFFL-201ENST00000315249 PPP1R3GB7ZBB8 358 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 ANXA9O76027 345 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 PTPN11Q06124 597 aaPredicted RBP14.02□□□□□ -0.16
RFFL-201ENST00000315249 TRIM65Q6PJ69 517 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 C16orf59Q7L2K0 433 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 ADAM32Q8TC27 787 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 BARX2Q9UMQ3 279 aaPredicted RBP14.02□□□□□ -0.16
RFFL-201ENST00000315249 ALG6Q9Y672 507 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 HNRNPCL2B2RXH8 293 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 HNRNPCL1O60812 293 aaKnown RBP14.02□□□□□ -0.16
RFFL-201ENST00000315249 GUCY2CP25092 1073 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 TUFMP49411 452 aaKnown RBP14.02□□□□□ -0.16
RFFL-201ENST00000315249 UGP2Q16851 508 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 BOLA3Q53S33 107 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 NAPEPLDQ6IQ20 393 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 DENND5BQ6ZUT9 1274 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 CALML6Q8TD86 181 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 THAP2Q9H0W7 228 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 NFASCO94856 1347 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 PHF2O75151 1096 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 KCNJ1P48048 391 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 TEX12Q9BXU0 123 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 KIF17Q9P2E2 1029 aa14.02□□□□□ -0.16
RFFL-201ENST00000315249 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.02□□□□□ -0.16
RFFL-201ENST00000315249 SSU72P8A0A1W2PR75 194 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 TBC1D12O60347 775 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 CYP11B1P15538 503 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 SCNN1BP51168 640 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 NBPF20Q3BBV1 942 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 CYTH2Q99418 400 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 BRD8Q9H0E9 1235 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 NUDT5Q9UKK9 219 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 FBXO21O94952 628 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 OR1E1P30953 314 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 CCR1P32246 355 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 C3orf62Q6ZUJ4 267 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 SLC5A5Q92911 643 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 MRIQ9BWK5 157 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 TXLNGQ9NUQ3 528 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 TSPAN16Q9UKR8 245 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 RAB23Q9ULC3 237 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 TPX2Q9ULW0 747 aaKnown RBP14.02□□□□□ -0.17
RFFL-201ENST00000315249 NCKAP1Q9Y2A7 1128 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 ACKR2O00590 384 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 TCEA2Q15560 299 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 NIPA1Q7RTP0 329 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 ZNF669Q96BR6 464 aaPredicted RBP14.02□□□□□ -0.17
RFFL-201ENST00000315249 TRIM51Q9BSJ1 452 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 TUBB6Q9BUF5 446 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 SLC28A3Q9HAS3 691 aa14.02□□□□□ -0.17
RFFL-201ENST00000315249 MRPS23Q9Y3D9 190 aaKnown RBP14.02□□□□□ -0.17
RFFL-201ENST00000315249 GAKO14976 1311 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 EML1O00423 815 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 PHKG1Q16816 387 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 EMC1Q8N766 993 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 VGLL2Q8N8G2 317 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 RBM15Q96T37 977 aaKnown RBP eCLIP14.01□□□□□ -0.17
RFFL-201ENST00000315249 NT5C1B-RDH14C9J2C7 533 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 PLPP4Q5VZY2 271 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 TIGD7Q6NT04 549 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 CYP3A43Q9HB55 503 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 USP18Q9UMW8 372 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 RTN3O95197 1032 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 ITGA7Q13683 1181 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 SV2AQ7L0J3 742 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 SPATS2Q86XZ4 545 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms