RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 RIBC1Q8N443 379 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ADAM32Q8TC27 787 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PIH1D2Q8WWB5 315 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 RBM41Q96IZ5 413 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 TGS1Q96RS0 853 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 MRPL1Q9BYD6 325 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CCDC177Q9NQR7 707 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PARPBPQ9NWS1 579 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 MTMR4Q9NYA4 1195 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CDC23Q9UJX2 597 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC12A4Q9UP95 1085 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CBY1Q9Y3M2 126 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 RBM8AQ9Y5S9 174 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 LCHNA4D1U4 455 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 NOTOA8MTQ0 251 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 UBAP1LF5GYI3 381 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 HAT1O14929 419 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 KHNYNO15037 678 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ZBED1O96006 694 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM58BPP0C7Q3 252 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ITIH1P19827 911 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CDK2P24941 298 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 IL12AP29459 219 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 MARSP56192 900 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 SNAP47Q5SQN1 464 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 NIPAL3Q6P499 406 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 FBXO38Q6PIJ6 1188 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 HAUS6Q7Z4H7 955 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CPT1CQ8TCG5 803 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PI4K2AQ9BTU6 479 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF717Q9BY31 904 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PRDM11Q9NQV5 511 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 TRIM10Q9UDY6 481 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 LOC100509620A0A075B734 347 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 A0A0A6YYH2 397 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 A6NJ64 397 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 F8W8V4 182 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PMPCBO75439 489 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 OR6B1O95007 311 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CBX3Q13185 183 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PLEKHG4Q58EX7 1191 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 APOA5Q6Q788 366 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 DGKHQ86XP1 1220 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ZZZ3Q8IYH5 903 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 METTL13Q8N6R0 699 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PYROXD1Q8WU10 500 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ATXN7L3BQ96GX2 97 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 NSL1Q96IY1 281 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 CNNM2Q9H8M5 875 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF282Q9UDV7 671 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 HMX3A6NHT5 357 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 SMAD9O15198 467 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 CST8O60676 142 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 GALK1P51570 392 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 XIAPP98170 497 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 C1DQ13901 141 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 KIAA1755Q5JYT7 1200 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 MPP7Q5T2T1 576 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 FMN1Q68DA7 1419 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 CWF19L1Q69YN2 538 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF655Q8N720 491 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 DDX1Q92499 740 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM193BQ96PV7 902 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 XPO6Q96QU8 1125 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 PHACTR1Q9C0D0 580 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 DYRK1BQ9Y463 629 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 KDRP35968 1356 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 TEX51A0A1B0GUA7 166 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 WDR64B1ANS9 1081 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 E2F3O00716 465 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 OIP5O43482 229 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDHGA12O60330 932 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 ADAMTS2O95450 1211 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 GSPT1P15170 499 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 ADSSP30520 456 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 ACLYP53396 1101 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 COPAP53621 1224 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 CABP4P57796 275 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 PAK1Q13153 545 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 POLD3Q15054 466 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 PON2Q15165 354 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 SULT6B1Q6IMI4 303 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 CNNM4Q6P4Q7 775 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 SPATA21Q7Z572 469 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 DAW1Q8N136 415 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 MEIOBQ8N635 442 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 KCTD6Q8NC69 237 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 CEP295NLQ96MC4 621 aa7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 ALDH8A1Q9H2A2 487 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 DDX25Q9UHL0 483 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-201ENST00000313860 CCRL2O00421 344 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CTIFO43310 598 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 MAKP20794 623 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CCT4P50991 539 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 AARDQ4LEZ3 155 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 MRPL48Q96GC5 212 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 GAL3ST1Q99999 423 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CALN1Q9BXU9 219 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ZMYND12Q9H0C1 365 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 NKIRAS2Q9NYR9 191 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms