RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 DHX38Q92620 1227 aaKnown RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 ZNF653Q96CK0 615 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 SMARCAD1Q9H4L7 1026 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 WDR35Q9P2L0 1181 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 NVLO15381 856 aaKnown RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 PSTPIP1O43586 416 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 DLATP10515 647 aaKnown RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 SP100P23497 879 aaPredicted RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 KLRC2P26717 231 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 GCAP28676 217 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 MAGEA4P43358 317 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 CYP2J2P51589 502 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 KRT76Q01546 638 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 C4orf50Q6ZRC1 276 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 CCDC60Q8IWA6 550 aaPredicted RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 TEKT4Q8WW24 435 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 FAM167BQ9BTA0 163 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 UBE2OQ9C0C9 1292 aaKnown RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 DENND2DQ9H6A0 471 aaPredicted RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 ERAP1Q9NZ08 941 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 NOD1Q9Y239 953 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 TRIP12Q14669 1992 aaPredicted RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 C17orf102A2RUQ5 167 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 TYROBPO43914 113 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 GAS7O60861 476 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 LRRN2O75325 713 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 RTN3O95197 1032 aaPredicted RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 BIRC2Q13490 618 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 KRT72Q14CN4 511 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 CLEC16AQ2KHT3 1053 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 CTC1Q2NKJ3 1217 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 B3GNT9Q6UX72 402 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 KCNV2Q8TDN2 545 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 LRRC8CQ8TDW0 803 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 PARD3BQ8TEW8 1205 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 C1orf54Q8WWF1 131 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 DDX1Q92499 740 aaKnown RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 KIFAP3Q92845 792 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 WNT8BQ93098 351 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 DDX27Q96GQ7 796 aaKnown RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 POP1Q99575 1024 aaKnown RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 TIPINQ9BVW5 301 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 TEKT3Q9BXF9 490 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 UNC45AQ9H3U1 944 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 TRABDQ9H4I3 376 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 CHST7Q9NS84 486 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 SETD4Q9NVD3 440 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 HAO1Q9UJM8 370 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 CCDC22O60826 627 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 SKIP12755 728 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 TARSP26639 723 aaKnown RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 GTF2H1P32780 548 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 ADCY8P40145 1251 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 PEX19P40855 299 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 GPC3P51654 580 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 STAT5BP51692 787 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 CCL23P55773 120 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 FPGSQ05932 587 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 PPP3CAQ08209 521 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 SF3A3Q12874 501 aaKnown RBP eCLIP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 KCTD19Q17RG1 926 aaPredicted RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 PPP1R2P3Q6NXS1 205 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 ENOSF1Q7L5Y1 443 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 PLPPR4Q7Z2D5 763 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 ZNF677Q86XU0 584 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 ARHGAP18Q8N392 663 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 SLC17A8Q8NDX2 589 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 KREMEN1Q96MU8 473 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 ACCSQ96QU6 501 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 NR1H4Q96RI1 486 aaPredicted RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 SYT15Q9BQS2 421 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 DDX43Q9NXZ2 648 aaKnown RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 TCEAL9Q9UHQ7 104 aa10.83□□□□□ -0.68
UPF3B-201ENST00000276201 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.83□□□□□ -0.68
UPF3B-201ENST00000276201 ENO4A6NNW6 628 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 CHMP2AO43633 222 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 SMIM24O75264 130 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 TGDSO95455 350 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 GNAT1P11488 350 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 CSF2RAP15509 400 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 CYP11B1P15538 503 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 TSHRP16473 764 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 RPS6KA3P51812 740 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 ADAM17P78536 824 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 PTK7Q13308 1070 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 DYNC1I2Q13409 638 aaKnown RBP10.82□□□□□ -0.68
UPF3B-201ENST00000276201 TRIM71Q2Q1W2 868 aaKnown RBP10.82□□□□□ -0.68
UPF3B-201ENST00000276201 ODR4Q5SWX8 454 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 FYB2Q5VWT5 728 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 IZUMO3Q5VZ72 239 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 SMYD5Q6GMV2 418 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 SWSAP1Q6NVH7 229 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 SERINC5Q86VE9 423 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 KATNAL2Q8IYT4 538 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 ZBTB10Q96DT7 871 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 DTNBP1Q96EV8 351 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 DYDC2Q96IM9 177 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 SMC6Q96SB8 1091 aa10.82□□□□□ -0.68
UPF3B-201ENST00000276201 KIAA1586Q9HCI6 787 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms