RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 APOBEC3GQ9HC16 384 aaKnown RBP15.37■□□□□ 0.05
HMGN3-201ENST00000275036 RBM12Q9NTZ6 932 aaKnown RBP15.37■□□□□ 0.05
HMGN3-201ENST00000275036 UXTQ9UBK9 157 aaPredicted RBP15.37■□□□□ 0.05
HMGN3-201ENST00000275036 FBXO4Q9UKT5 387 aa15.37■□□□□ 0.05
HMGN3-201ENST00000275036 MRPS17Q9Y2R5 130 aaKnown RBP15.37■□□□□ 0.05
HMGN3-201ENST00000275036 MYO16Q9Y6X6 1858 aa15.37■□□□□ 0.05
HMGN3-201ENST00000275036 ZNF292O60281 2723 aa15.37■□□□□ 0.05
HMGN3-201ENST00000275036 MYOFQ9NZM1 2061 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 TRIM49BA6NDI0 452 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 SPECC1L-ADORA2AF8WAN1 911 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 DPYSL4O14531 572 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CLSTN1O94985 981 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 SMC2O95347 1197 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 KRT13P13646 458 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CD44P16070 742 aaKnown RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 DDX6P26196 483 aaKnown RBP eCLIP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CTHP32929 405 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 MLLT6P55198 1093 aaPredicted RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CSTF1Q05048 431 aaKnown RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ENPEPQ07075 957 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ORC1Q13415 861 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ARHGAP29Q52LW3 1261 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ANKRD40Q6AI12 368 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 TRIM68Q6AZZ1 485 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 MON1AQ86VX9 555 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ZC3H3Q8IXZ2 948 aaKnown RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ELOA2Q8IYF1 753 aaPredicted RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 ADSSL1Q8N142 457 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CELF5Q8N6W0 485 aaKnown RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CSGALNACT1Q8TDX6 532 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 MRPS31Q92665 395 aaKnown RBP15.36■□□□□ 0.05
HMGN3-201ENST00000275036 TAF4BQ92750 862 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 NELL1Q92832 810 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 CYP2S1Q96SQ9 504 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 FAM83CQ9BQN1 747 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 LMAN1LQ9HAT1 526 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 HPS4Q9NQG7 708 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 C2orf42Q9NWW7 574 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 MAN1B1Q9UKM7 699 aa15.36■□□□□ 0.05
HMGN3-201ENST00000275036 C2orf78A6NCI8 922 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 TRIM66O15016 1216 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 NCAM2O15394 837 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 BMP6P22004 513 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 HOXC13P31276 330 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 AVPR1AP37288 418 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 KPNA1P52294 538 aaPredicted RBP15.35■□□□□ 0.05
HMGN3-201ENST00000275036 NDST1P52848 882 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 ZNF528Q3MIS6 628 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 Q6ZS52 159 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 DENND5BQ6ZUT9 1274 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 ACOT1Q86TX2 421 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 SEMA4DQ92854 862 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 C8orf48Q96LL4 319 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 TTLL2Q9BWV7 592 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 TMEM8AQ9HCN3 771 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 TDP1Q9NUW8 608 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 GCNT4Q9P109 453 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 ZMYM5Q9UJ78 669 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 PTPRZ1P23471 2315 aaPredicted RBP15.35■□□□□ 0.05
HMGN3-201ENST00000275036 GPR179Q6PRD1 2367 aa15.35■□□□□ 0.05
HMGN3-201ENST00000275036 OTOGLQ3ZCN5 2332 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 SOBPA7XYQ1 873 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 CETN3O15182 167 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 KINO60870 393 aaKnown RBP15.34■□□□□ 0.05
HMGN3-201ENST00000275036 ARSAP15289 507 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 ANXA13P27216 316 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 NOP14P78316 857 aaKnown RBP15.34■□□□□ 0.05
HMGN3-201ENST00000275036 ZXDBP98169 803 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 PON2Q15165 354 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 NAIF1Q69YI7 327 aaPredicted RBP15.34■□□□□ 0.05
HMGN3-201ENST00000275036 FAM35AQ86V20 835 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 FUKQ8N0W3 1084 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 SUMF1Q8NBK3 374 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 ZBTB44Q8NCP5 570 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 CEP295NLQ96MC4 621 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 TWNKQ96RR1 684 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 KCNK16Q96T55 309 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 ELOVL4Q9GZR5 314 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 TRPC7Q9HCX4 862 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 GKN1Q9NS71 199 aa15.34■□□□□ 0.05
HMGN3-201ENST00000275036 EP300Q09472 2414 aaPredicted RBP15.33■□□□□ 0.04
HMGN3-201ENST00000275036 DCHS1Q96JQ0 3298 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 LMNAP02545 664 aaKnown RBP15.33■□□□□ 0.04
HMGN3-201ENST00000275036 EPB41P11171 864 aaKnown RBP15.33■□□□□ 0.04
HMGN3-201ENST00000275036 P4HA1P13674 534 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 CCDC130P13994 396 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 PLCB2Q00722 1185 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 SATB1Q01826 763 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 INCA1Q0VD86 236 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 USP4Q13107 963 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 ZNF268Q14587 947 aaPredicted RBP15.33■□□□□ 0.04
HMGN3-201ENST00000275036 ZNF77Q15935 545 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 KRT39Q6A163 491 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 RALGPS2Q86X27 583 aaPredicted RBP15.33■□□□□ 0.04
HMGN3-201ENST00000275036 CRYBG2Q8N1P7 616 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 ARL14EPQ8N8R7 260 aaPredicted RBP15.33■□□□□ 0.04
HMGN3-201ENST00000275036 C12orf29Q8N999 325 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 ZMIZ2Q8NF64 920 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 MSANTD3Q96H12 275 aa15.33■□□□□ 0.04
HMGN3-201ENST00000275036 TNIP3Q96KP6 325 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms