RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CST8O60676 142 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 ITGBL1O95965 494 aaPredicted RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 PDGFRAP16234 1089 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 AKAP5P24588 427 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 PNPLA4P41247 253 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 DYNLT1P63172 113 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 TAZQ16635 292 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 FSCN1Q16658 493 aaKnown RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 MFSD5Q6N075 450 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 PRUNE1Q86TP1 453 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 RELL1Q8IUW5 271 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 ZCCHC9Q8N567 271 aaKnown RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 CMASQ8NFW8 434 aaPredicted RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 SLC35B2Q8TB61 432 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 TMEM40Q8WWA1 233 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 HSPH1Q92598 858 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 DNAJC17Q9NVM6 304 aaKnown RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 TPX2Q9ULW0 747 aaKnown RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 SMIM28A0A1B0GU29 152 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 C2CD4BA6NLJ0 364 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 PIK3R2O00459 728 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 EBAG9O00559 213 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 KCNE1P15382 129 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 DESP17661 470 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 SLCO1A2P46721 670 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 RGS7P49802 495 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 ZNF200P98182 395 aaPredicted RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 GPS1Q13098 491 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 KYNUQ16719 465 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 PKDCCQ504Y2 493 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 FBXO47Q5MNV8 452 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 RFX6Q8HWS3 928 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 IFNL1Q8IU54 200 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 C7orf31Q8N865 590 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 ACTL9Q8TC94 416 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 RXFP2Q8WXD0 754 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 SERPINB12Q96P63 405 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 TMEM121Q9BTD3 319 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 ADAM7Q9H2U9 754 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 RSAD1Q9HA92 442 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 PCDH9Q9HC56 1237 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 RYDENQ9NUL5 291 aaKnown RBP13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 FAM49BQ9NUQ9 324 aa13.57□□□□□ -0.24
SPTLC1-201ENST00000262554 A8MXQ7 604 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 E7EVH7 732 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 PIRO00625 290 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 TNPO2O14787 897 aaKnown RBP13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 ZSCAN5DPP0CG00 497 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 ATP5DP30049 168 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 RDXP35241 583 aaKnown RBP13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 OTUD4Q01804 1114 aaKnown RBP13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 AUHQ13825 339 aaKnown RBP13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 MORF4L2Q15014 288 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 SOWAHAQ2M3V2 549 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 PMF1Q6P1K2 205 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 TAOK1Q7L7X3 1001 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 SESTD1Q86VW0 696 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 NLRP14Q86W24 1093 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 TTC30AQ86WT1 665 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 GLIS1Q8NBF1 620 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 RBM15Q96T37 977 aaKnown RBP eCLIP13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 CALN1Q9BXU9 219 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 SLC4A5Q9BY07 1137 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 ZFYVE28Q9HCC9 887 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 PPANQ9NQ55 473 aaKnown RBP13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 NINJ2Q9NZG7 142 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 KLK14Q9P0G3 267 aa13.56□□□□□ -0.24
SPTLC1-201ENST00000262554 KPNA7A9QM74 516 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 PRPSAP2O60256 369 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 AKR1A1P14550 325 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 ETS1P14921 441 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 MMP13P45452 471 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 INHBEP58166 350 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 IFI35P80217 286 aaPredicted RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 PURAQ00577 322 aaKnown RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SLC6A3Q01959 620 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 LONRF1Q17RB8 773 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 XKR4Q5GH76 650 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TNFAIP8L3Q5GJ75 292 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 UBXN11Q5T124 520 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 ARHGAP17Q68EM7 881 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 RGMBQ6NW40 437 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 B4GALNT4Q76KP1 1039 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 PCGF5Q86SE9 256 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TMEM110Q86TL2 294 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 ZDHHC17Q8IUH5 632 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 STK32AQ8WU08 396 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SLC35F5Q8WV83 523 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 CENPTQ96BT3 561 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 PWWP2AQ96N64 755 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 CCT8L2Q96SF2 557 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SELENOSQ9BQE4 189 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 CCDC77Q9BR77 488 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 MAK16Q9BXY0 300 aaKnown RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 GDAP2Q9NXN4 497 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 GJD2Q9UKL4 321 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 GMNCA6NCL1 334 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 APOC4-APOC2K7ER74 178 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 DPYSL4O14531 572 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TRAPPC3O43617 180 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms