RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ISM2Q6H9L7 571 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 TPRG1Q6ZUI0 275 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 MON1AQ86VX9 555 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 SCN4BQ8IWT1 228 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 ZC3H3Q8IXZ2 948 aaKnown RBP20.51■□□□□ 0.87
CLN3-260ENST00000637578 B3GALNT2Q8NCR0 500 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 PHOX2BQ99453 314 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 SDCBP2Q9H190 292 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 LTB4R2Q9NPC1 389 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 KIAA1468Q9P260 1216 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 MAGED2Q9UNF1 606 aaPredicted RBP20.51■□□□□ 0.87
CLN3-260ENST00000637578 A8MXQ7 604 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 BIN1O00499 593 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 HLA-DRAP01903 254 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 KRT13P13646 458 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 CYP27A1Q02318 531 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 ZNF852Q6ZMS4 543 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 GPIHBP1Q8IV16 184 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 ZNF687Q8N1G0 1237 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 ELMO3Q96BJ8 720 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 C8orf48Q96LL4 319 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 COL4A2P08572 1712 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 FAM170BA6NMN3 283 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 TRIM49P0CI25 452 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 TRIM49CP0CI26 452 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 CD72P21854 359 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 GTF2H1P32780 548 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 GRIK1P39086 918 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 FZD5Q13467 585 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 TXNDC8Q6A555 127 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 ADSSL1Q8N142 457 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 CELF5Q8N6W0 485 aaKnown RBP20.5■□□□□ 0.87
CLN3-260ENST00000637578 MAB21L3Q8N8X9 362 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 ATOH1Q92858 354 aaPredicted RBP20.5■□□□□ 0.87
CLN3-260ENST00000637578 CLDN23Q96B33 292 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 TTLL2Q9BWV7 592 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 B3GNT5Q9BYG0 378 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 TMEM30AQ9NV96 361 aa20.5■□□□□ 0.87
CLN3-260ENST00000637578 NUP210Q8TEM1 1887 aaPredicted RBP20.49■□□□□ 0.87
CLN3-260ENST00000637578 PTPRDP23468 1912 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 F5P12259 2224 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 DPYSL4O14531 572 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 TRIM66O15016 1216 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 LRRN2O75325 713 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 P4HA1P13674 534 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 PTMSP20962 102 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 ASPAP45381 313 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 RAP1GAPP47736 663 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 GCLMP48507 274 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 NOP14P78316 857 aaKnown RBP20.49■□□□□ 0.87
CLN3-260ENST00000637578 ANGPT1Q15389 498 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 ARHGAP29Q52LW3 1261 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 YAF2Q8IY57 180 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 BPIFB1Q8TDL5 484 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 TAS1R2Q8TE23 839 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 MRPS31Q92665 395 aaKnown RBP20.49■□□□□ 0.87
CLN3-260ENST00000637578 USP13Q92995 863 aaPredicted RBP20.49■□□□□ 0.87
CLN3-260ENST00000637578 BCO2Q9BYV7 579 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 ELOVL4Q9GZR5 314 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 TMEM8AQ9HCN3 771 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 DENND4CQ5VZ89 1909 aa20.49■□□□□ 0.87
CLN3-260ENST00000637578 MAN2B1O00754 1011 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 CETN3O15182 167 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 BMP6P22004 513 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 PMS1P54277 932 aaKnown RBP20.48■□□□□ 0.87
CLN3-260ENST00000637578 CACNA2D1P54289 1103 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 MORC3Q14149 939 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 ZNF268Q14587 947 aaPredicted RBP20.48■□□□□ 0.87
CLN3-260ENST00000637578 UBXN2BQ14CS0 331 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 ANKRD40Q6AI12 368 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 DENND5BQ6ZUT9 1274 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 CRYBG2Q8N1P7 616 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 EEF2KMTQ96G04 330 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 TNIP3Q96KP6 325 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 ZNF518BQ9C0D4 1074 aa20.48■□□□□ 0.87
CLN3-260ENST00000637578 SMG9Q9H0W8 520 aaKnown RBP20.48■□□□□ 0.87
CLN3-260ENST00000637578 MRPS17Q9Y2R5 130 aaKnown RBP20.48■□□□□ 0.87
CLN3-260ENST00000637578 PROB1E7EW31 1015 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 F8VP50 259 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 TARSP26639 723 aaKnown RBP20.47■□□□□ 0.87
CLN3-260ENST00000637578 AVPR1AP37288 418 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 PIK3CAP42336 1068 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 MAGEA9P43362 315 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 RPS9P46781 194 aaKnown RBP20.47■□□□□ 0.87
CLN3-260ENST00000637578 MRE11P49959 708 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 USP46P62068 366 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 SPOPLQ6IQ16 392 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 SCARA5Q6ZMJ2 495 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 PAQR9Q6ZVX9 377 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 ALYREFQ86V81 257 aaKnown RBP20.47■□□□□ 0.87
CLN3-260ENST00000637578 UNC93AQ86WB7 457 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 KIF9Q9HAQ2 790 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 APOBEC3GQ9HC16 384 aaKnown RBP20.47■□□□□ 0.87
CLN3-260ENST00000637578 TDP1Q9NUW8 608 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 FAM86C1Q9NVL1 165 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 TMEM63CQ9P1W3 806 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 CCL26Q9Y258 94 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 PIAS3Q9Y6X2 628 aa20.47■□□□□ 0.87
CLN3-260ENST00000637578 CLDN5O00501 218 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 ANXA13P27216 316 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms