RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SOBPA7XYQ1 873 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 HCRTO43612 131 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 GDF9O60383 454 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 MOSPD3O75425 235 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 ATF6P18850 670 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 CYP2F1P24903 491 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 RPL13P26373 211 aaKnown RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 CDC25CP30307 473 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 GNL1P36915 607 aaPredicted RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 GPR15P49685 360 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 LIMK1P53667 647 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 AP3M2P53677 418 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 PSMC1P62191 440 aaKnown RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 CYP27A1Q02318 531 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 PNOCQ13519 176 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 KCNB1Q14721 858 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 DDR2Q16832 855 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 AASDHQ4L235 1098 aaPredicted RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 SDHAF4Q5VUM1 108 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 C4orf50Q6ZRC1 276 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 TMC8Q8IU68 726 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 SYAP1Q96A49 352 aaPredicted RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 ASB16Q96NS5 453 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 TRMT61BQ9BVS5 477 aaKnown RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 RMND1Q9NWS8 449 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 MAGEC2Q9UBF1 373 aaPredicted RBP12.43□□□□□ -0.42
CLN3-257ENST00000637110 CDH9Q9ULB4 789 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 ZMIZ1Q9ULJ6 1067 aa12.43□□□□□ -0.42
CLN3-257ENST00000637110 FRYQ5TBA9 3013 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 MYBPHLA2RUH7 354 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 MAN2B1O00754 1011 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 NRG2O14511 850 aaPredicted RBP12.42□□□□□ -0.42
CLN3-257ENST00000637110 GABRDO14764 452 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 ZNF263O14978 683 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 ATP2C2O75185 946 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 SMC2O95347 1197 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 CSH1P0DML2 217 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 CSH2P0DML3 217 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 TDGF1P13385 188 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 KRT13P13646 458 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 PSMC3P17980 439 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 WARSP23381 471 aaKnown RBP12.42□□□□□ -0.42
CLN3-257ENST00000637110 NR2F2P24468 414 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 LMO2P25791 158 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 GDI1P31150 447 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 ATICP31939 592 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 CNR2P34972 360 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 CYP4F8P98187 520 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 NCOA4Q13772 614 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 MAPRE1Q15691 268 aaKnown RBP12.42□□□□□ -0.42
CLN3-257ENST00000637110 ZNF699Q32M78 642 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 ZNF667Q5HYK9 610 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 STXBP5Q5T5C0 1151 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 POTEHQ6S545 545 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 UNQ6494/PRO21346Q6UXR6 183 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 SLC9A9Q8IVB4 645 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 FMR1NBQ8N0W7 255 aaPredicted RBP12.42□□□□□ -0.42
CLN3-257ENST00000637110 STKLD1Q8NE28 680 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 PLEKHO2Q8TD55 490 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 PARD3BQ8TEW8 1205 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 KBTBD7Q8WVZ9 684 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 E2F7Q96AV8 911 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 MRPL45Q9BRJ2 306 aaKnown RBP12.42□□□□□ -0.42
CLN3-257ENST00000637110 LRRC3Q9BY71 257 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 CHRDQ9H2X0 955 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 MMRN2Q9H8L6 949 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 DMAC2Q9NW81 257 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 TRAF3IP3Q9Y228 551 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 GREB1Q4ZG55 1949 aa12.42□□□□□ -0.42
CLN3-257ENST00000637110 F5P12259 2224 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 HEPACAM2A8MVW5 462 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 A8MXQ7 604 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 FCARP24071 287 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 ANXA13P27216 316 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 GRIK1P39086 918 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 VAMP7P51809 220 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 DLG4P78352 724 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 FAM160A1Q05DH4 1040 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 ADAM9Q13443 819 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 CCDC142Q17RM4 750 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 MDH1BQ5I0G3 518 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 TDRD10Q5VZ19 366 aaKnown RBP12.41□□□□□ -0.42
CLN3-257ENST00000637110 VITQ6UXI7 678 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 SCARA5Q6ZMJ2 495 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 GAREM2Q75VX8 874 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 ARID3BQ8IVW6 561 aaPredicted RBP12.41□□□□□ -0.42
CLN3-257ENST00000637110 SMYD4Q8IYR2 804 aaPredicted RBP12.41□□□□□ -0.42
CLN3-257ENST00000637110 GUF1Q8N442 669 aaKnown RBP12.41□□□□□ -0.42
CLN3-257ENST00000637110 C12orf50Q8NA57 414 aaPredicted RBP12.41□□□□□ -0.42
CLN3-257ENST00000637110 DEPDC1BQ8WUY9 529 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 MRPS31Q92665 395 aaKnown RBP12.41□□□□□ -0.42
CLN3-257ENST00000637110 DNASE1L2Q92874 299 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 IRF7Q92985 503 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 SMARCE1Q969G3 411 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 MYLPFQ96A32 169 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 TASP1Q9H6P5 420 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 ABCB6Q9NP58 842 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 HEBP1Q9NRV9 189 aa12.41□□□□□ -0.42
CLN3-257ENST00000637110 TMEM8BA6NDV4 472 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 SLC38A8A6NNN8 435 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms