RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 LRMPQ12912 555 aa22■■□□□ 1.11
CLN3-240ENST00000631023 ORC1Q13415 861 aa22■■□□□ 1.11
CLN3-240ENST00000631023 HTR4Q13639 388 aa22■■□□□ 1.11
CLN3-240ENST00000631023 TEAD2Q15562 447 aa22■■□□□ 1.11
CLN3-240ENST00000631023 CAVIN1Q6NZI2 390 aaKnown RBP22■■□□□ 1.11
CLN3-240ENST00000631023 EHBP1Q8NDI1 1231 aa22■■□□□ 1.11
CLN3-240ENST00000631023 ENOX1Q8TC92 643 aaKnown RBP22■■□□□ 1.11
CLN3-240ENST00000631023 TRMT2BQ96GJ1 504 aaKnown RBP22■■□□□ 1.11
CLN3-240ENST00000631023 SMARCD1Q96GM5 515 aa22■■□□□ 1.11
CLN3-240ENST00000631023 NUP210Q8TEM1 1887 aaPredicted RBP22■■□□□ 1.11
CLN3-240ENST00000631023 F8VP50 259 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 NOL4O94818 638 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 PARM1Q6UWI2 310 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 DENND5BQ6ZUT9 1274 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 FAM35AQ86V20 835 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 FUKQ8N0W3 1084 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 SLC44A3Q8N4M1 653 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 MYRFLQ96LU7 910 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 ARID3AQ99856 593 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 IL21Q9HBE4 155 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 ZMYM5Q9UJ78 669 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 NUMBLQ9Y6R0 609 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 MAN2A1Q16706 1144 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 ZNF394Q53GI3 561 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 PPM1KQ8N3J5 372 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 C12orf29Q8N999 325 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 LMO3Q8TAP4 145 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 WHAMMQ8TF30 809 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 RSAD2Q8WXG1 361 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 FGF14Q92915 247 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 HEXIM2Q96MH2 286 aaKnown RBP21.99■■□□□ 1.11
CLN3-240ENST00000631023 TWNKQ96RR1 684 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 FAM49BQ9NUQ9 324 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 NFE2L3Q9Y4A8 694 aa21.99■■□□□ 1.11
CLN3-240ENST00000631023 CCDC130P13994 396 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 KLHL40Q2TBA0 621 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 PAQR9Q6ZVX9 377 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 STKLD1Q8NE28 680 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 SLC2A14Q8TDB8 520 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 SMARCD2Q92925 531 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 CYFIP2Q96F07 1278 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 TMEM176AQ96HP8 235 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 HNRNPABQ99729 332 aaKnown RBP21.98■■□□□ 1.11
CLN3-240ENST00000631023 ZFP14Q9HCL3 533 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 DMAP1Q9NPF5 467 aaPredicted RBP21.98■■□□□ 1.11
CLN3-240ENST00000631023 GCNT4Q9P109 453 aa21.98■■□□□ 1.11
CLN3-240ENST00000631023 AP1G2O75843 785 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 LETM1O95202 739 aaPredicted RBP21.97■■□□□ 1.11
CLN3-240ENST00000631023 F11P03951 625 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 PRKCSHP14314 528 aaPredicted RBP21.97■■□□□ 1.11
CLN3-240ENST00000631023 SIGLEC14Q08ET2 396 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 FAM78AQ5JUQ0 283 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 GPR158Q5T848 1215 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 GBP6Q6ZN66 633 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 TRIM67Q6ZTA4 783 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 ZSCAN18Q8TBC5 510 aaPredicted RBP21.97■■□□□ 1.11
CLN3-240ENST00000631023 MRPS31Q92665 395 aaKnown RBP21.97■■□□□ 1.11
CLN3-240ENST00000631023 E2F7Q96AV8 911 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 ZSWIM3Q96MP5 696 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 ASB16Q96NS5 453 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 TUBGCP2Q9BSJ2 902 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 NAT10Q9H0A0 1025 aaKnown RBP21.97■■□□□ 1.11
CLN3-240ENST00000631023 KRT82Q9NSB4 513 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 SAMSN1Q9NSI8 373 aaKnown RBP21.97■■□□□ 1.11
CLN3-240ENST00000631023 DUSP12Q9UNI6 340 aa21.97■■□□□ 1.11
CLN3-240ENST00000631023 GTPBP10A4D1E9 387 aaKnown RBP21.96■■□□□ 1.11
CLN3-240ENST00000631023 SOBPA7XYQ1 873 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 KCNJ18B7U540 433 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 NRG2O14511 850 aaPredicted RBP21.96■■□□□ 1.11
CLN3-240ENST00000631023 ECI2O75521 394 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 DDX6P26196 483 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLN3-240ENST00000631023 EEF1GP26641 437 aaKnown RBP21.96■■□□□ 1.11
CLN3-240ENST00000631023 RAD23BP54727 409 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 GCNT1Q02742 428 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 TYRO3Q06418 890 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 KCNJ12Q14500 433 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 HSP90AA4PQ58FG1 418 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 NUP93Q8N1F7 819 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 ST13P5Q8NFI4 369 aaPredicted RBP21.96■■□□□ 1.11
CLN3-240ENST00000631023 ELSPBP1Q96BH3 223 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 INTS2Q9H0H0 1204 aaKnown RBP21.96■■□□□ 1.11
CLN3-240ENST00000631023 TASP1Q9H6P5 420 aa21.96■■□□□ 1.11
CLN3-240ENST00000631023 RTN3O95197 1032 aaPredicted RBP21.95■■□□□ 1.11
CLN3-240ENST00000631023 FAM200BP0CF97 657 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 ADORA2BP29275 332 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 CACNA2D1P54289 1103 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 POTEHQ6S545 545 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 C11orf57Q6ZUT1 292 aaPredicted RBP21.95■■□□□ 1.11
CLN3-240ENST00000631023 SLC4A11Q8NBS3 891 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 FAM81BQ96LP2 452 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 KCNK16Q96T55 309 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 KXD1Q9BQD3 176 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 RPP25Q9BUL9 199 aaKnown RBP21.95■■□□□ 1.11
CLN3-240ENST00000631023 TRPV4Q9HBA0 871 aa21.95■■□□□ 1.11
CLN3-240ENST00000631023 PATJQ8NI35 1801 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 GPR37L1O60883 481 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 SRFP11831 508 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 CYP4F8P98187 520 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 EXOC3L4Q17RC7 722 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 VWA3BQ502W6 1294 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms