RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	C14orf80	Q86SX3	495 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	PEG10	Q86TG7	708 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	MICU3	Q86XE3	530 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	ADGRG3	Q86Y34	549 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	SDR16C5	Q8N3Y7	309 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	SLC15A4	Q8N697	577 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	CELF5	Q8N6W0	485 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	FAM156A	Q8NDB6	213 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	RP9	Q8TA86	221 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	TFAP2B	Q92481	460 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZC3H10	Q96K80	434 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	CRAMP1	Q96RY5	1269 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	TTYH3	Q9C0H2	523 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	NUP62CL	Q9H1M0	184 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	CHPF2	Q9P2E5	772 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	AFF4	Q9UHB7	1163 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	DDX20	Q9UHI6	824 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	INMT	O95050	263 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	PARN	O95453	639 aa	Known RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	IGLV2-14	P01704	120 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	CHRM2	P08172	466 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	ATF3	P18847	181 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	KCNA3	P22001	575 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	KLRC1	P26715	233 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	PDE6C	P51160	858 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	SUMO3	P55854	103 aa	Predicted RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	TBCC	Q15814	346 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	AARS2	Q5JTZ9	985 aa	Known RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	TMEM63B	Q5T3F8	832 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	FBXO42	Q6P3S6	717 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	CCDC149	Q6ZUS6	474 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZNF575	Q86XF7	245 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	PCSK9	Q8NBP7	692 aa	Known RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	SOCS4	Q8WXH5	440 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	MAML1	Q92585	1016 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	TBC1D5	Q92609	795 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	SPSB4	Q96A44	273 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	SARAF	Q96BY9	339 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	BBC3	Q96PG8	261 aa	Predicted RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	TRIM5	Q9C035	493 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	BHMT2	Q9H2M3	363 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	FAM83D	Q9H4H8	585 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	SERHL	Q9NQF3	203 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	ARHGEF3	Q9NR81	526 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	TRMT13	Q9NUP7	481 aa	Known RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	ARPP21	Q9UBL0	812 aa	Predicted RBP	3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	CAPN11	Q9UMQ6	739 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	GABRQ	Q9UN88	632 aa		3.74	□□□□□ -1.81
CNOT1-223	ENST00000628857	PYCARD-AS1	I3L0S3	204 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857		M0R3H8	397 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PPM1D	O15297	605 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	C1QL1	O75973	258 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	C1R	P00736	705 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PRKCB	P05771	671 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	DLD	P09622	509 aa	Known RBP	3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	FAM163B	P0C2L3	166 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PHKG2	P15735	406 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	CHRM3	P20309	590 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PEX2	P28328	305 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	CD38	P28907	300 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	LLGL1	Q15334	1064 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	TBC1D25	Q3MII6	688 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	FAM153C	Q494X1	144 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PLA1A	Q53H76	456 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	ARHGAP40	Q5TG30	622 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	SYCE2	Q6PIF2	218 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PARS2	Q7L3T8	475 aa	Known RBP	3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PTF1A	Q7RTS3	328 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	RAB11FIP4	Q86YS3	637 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	SLC15A3	Q8IY34	581 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	IPCEF1	Q8WWN9	437 aa	Predicted RBP	3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PHKB	Q93100	1093 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	HAPLN3	Q96S86	360 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PPP1R9B	Q96SB3	815 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	UNK	Q9C0B0	810 aa	Known RBP	3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	MS4A7	Q9GZW8	240 aa	Predicted RBP	3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PRDM13	Q9H4Q3	707 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	PRDM16	Q9HAZ2	1276 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZNF287	Q9HBT7	754 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	TRIM36	Q9NQ86	728 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	STK32B	Q9NY57	414 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	COL20A1	Q9P218	1284 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	OGDHL	Q9ULD0	1010 aa		3.73	□□□□□ -1.81
CNOT1-223	ENST00000628857	LOC102723971	A0A1B0GUV8	181 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	LINC00473	A8K010	186 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	MGST3	O14880	152 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	CSF1R	P07333	972 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	RHO	P08100	348 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	IL6R	P08887	468 aa	Predicted RBP	3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	ELFN1	P0C7U0	828 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	MYB	P10242	640 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	NR2F6	P10588	404 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	TXN	P10599	105 aa	Known RBP	3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	BRAF	P15056	766 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	GPD1	P21695	349 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	PCSK6	P29122	969 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	PLA2G5	P39877	138 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	BCAT1	P54687	386 aa		3.72	□□□□□ -1.81
CNOT1-223	ENST00000628857	KRT17	Q04695	432 aa		3.72	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms