RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 SMIM23A6NLE4 172 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 EIF3HO15372 352 aaKnown RBP eCLIP22.39■■□□□ 1.17
LIME1-210ENST00000621325 RIPK2O43353 540 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 RGS2P41220 211 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 RGS7P49802 495 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 EIF3BP55884 814 aaKnown RBP22.39■■□□□ 1.17
LIME1-210ENST00000621325 SLMAPQ14BN4 828 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 TAF5Q15542 800 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 GOLGA7BQ2TAP0 167 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 RAB6CQ53S08 254 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 TFDP3Q5H9I0 405 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 SWT1Q5T5J6 900 aaKnown RBP22.39■■□□□ 1.17
LIME1-210ENST00000621325 PPP1R26Q5T8A7 1209 aaPredicted RBP22.39■■□□□ 1.17
LIME1-210ENST00000621325 TRNP1Q6NT89 227 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 ZNF365Q70YC5 407 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 SUGP1Q8IWZ8 645 aaKnown RBP22.39■■□□□ 1.17
LIME1-210ENST00000621325 DDX23Q9BUQ8 820 aaKnown RBP22.39■■□□□ 1.17
LIME1-210ENST00000621325 RAB6CQ9H0N0 254 aa22.39■■□□□ 1.17
LIME1-210ENST00000621325 SAE1Q9UBE0 346 aaPredicted RBP22.39■■□□□ 1.17
LIME1-210ENST00000621325 E5RJQ4 531 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 IRF5Q13568 498 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 SH3PXD2AQ5TCZ1 1133 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 GSTA5Q7RTV2 222 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 APBB1IPQ7Z5R6 666 aaPredicted RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 DDX56Q9NY93 547 aaKnown RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 CNTN3Q9P232 1028 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 TNPO2O14787 897 aaKnown RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 CD48P09326 243 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 ZSCAN5DPP0CG00 497 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 KLRC2P26717 231 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 MAGOHP61326 146 aaKnown RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 BYSLQ13895 437 aaKnown RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 FSCN1Q16658 493 aaKnown RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 UBXN11Q5T124 520 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 AGBL2Q5U5Z8 902 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 C9orf57Q5W0N0 161 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 RGMBQ6NW40 437 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 POLNQ7Z5Q5 900 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 BEST2Q8NFU1 509 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 APBA2Q99767 749 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 CDC42EP4Q9H3Q1 356 aaKnown RBP22.38■■□□□ 1.17
LIME1-210ENST00000621325 ANAPC5Q9UJX4 755 aa22.38■■□□□ 1.17
LIME1-210ENST00000621325 TLDC2A0PJX2 215 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 GRAP2O75791 330 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 IGHA2P01877 340 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 ETS1P14921 441 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 COPS2P61201 443 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 DYNLT1P63172 113 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 FAM183BPQ6ZVS7 135 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 TTC30AQ86WT1 665 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 SGSM3Q96HU1 749 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 SMIM28A0A1B0GU29 152 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 MIPP30301 263 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 MAP2K2P36507 400 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 PURAQ00577 322 aaKnown RBP22.37■■□□□ 1.17
LIME1-210ENST00000621325 SOWAHAQ2M3V2 549 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 OR6B2Q6IFH4 312 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 SESTD1Q86VW0 696 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 TRPV1Q8NER1 839 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 FAM129AQ9BZQ8 928 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 DPEP3Q9H4B8 488 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 GOLGA2P5Q9HBQ8 144 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 ZNF148Q9UQR1 794 aa22.37■■□□□ 1.17
LIME1-210ENST00000621325 C17orf102A2RUQ5 167 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 PTPN7P35236 360 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 CRHR2Q13324 411 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 CHADLQ6NUI6 762 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 PMF1Q6P1K2 205 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 TRAIPQ9BWF2 469 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 KIAA1257Q9ULG3 409 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 SPTLC1O15269 473 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 CCDC89Q8N998 374 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 EPS8L3Q8TE67 593 aaKnown RBP22.36■■□□□ 1.17
LIME1-210ENST00000621325 PPM1EQ8WY54 764 aa22.36■■□□□ 1.17
LIME1-210ENST00000621325 RALGAPA2Q2PPJ7 1873 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 ACSL3O95573 720 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 SLCO1A2P46721 670 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 SOX4Q06945 474 aaPredicted RBP22.35■■□□□ 1.17
LIME1-210ENST00000621325 PCBP1Q15365 356 aaKnown RBP eCLIP22.35■■□□□ 1.171e-6■■■□□ 17.8
LIME1-210ENST00000621325 HADHQ16836 314 aaKnown RBP22.35■■□□□ 1.17
LIME1-210ENST00000621325 IZUMO3Q5VZ72 239 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 TTC39CQ8N584 583 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 LRRC52Q8N7C0 313 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 C7orf31Q8N865 590 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 ARRDC4Q8NCT1 418 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 OR6B3Q8NGW1 331 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 PEBP4Q96S96 227 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 C10orf88Q9H8K7 445 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 KRT7P08729 469 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 KDELR1P24390 212 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 MDH1P40925 334 aaKnown RBP22.35■■□□□ 1.17
LIME1-210ENST00000621325 C15orf59Q2T9L4 293 aaPredicted RBP22.35■■□□□ 1.17
LIME1-210ENST00000621325 P3H1Q32P28 736 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 PKDCCQ504Y2 493 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 ZNF618Q5T7W0 954 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 FAM43BQ6ZT52 329 aaPredicted RBP22.35■■□□□ 1.17
LIME1-210ENST00000621325 HOOK3Q86VS8 718 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 HSPH1Q92598 858 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 TLCD1Q96CP7 247 aa22.35■■□□□ 1.17
LIME1-210ENST00000621325 ZIC5Q96T25 663 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms