RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 FAM46DQ8NEK8 389 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 HASPINQ8TF76 798 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 ARHGEF12Q9NZN5 1544 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 NEO1Q92859 1461 aa6.34□□□□□ -1.4
VPS29-212ENST00000621131 SCAPERQ9BY12 1400 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 SIGLEC1Q9BZZ2 1709 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 NUP155O75694 1391 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 KANK1Q14678 1352 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 IQGAP3Q86VI3 1631 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 MANSC4A6NHS7 340 aaPredicted RBP6.33□□□□□ -1.4
VPS29-212ENST00000621131 M0QYG6 137 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 DNAJB5O75953 348 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 JUPP14923 745 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 VCAM1P19320 739 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 NEK2P51955 445 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 ZNF134P52741 427 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 EXOSC10Q01780 885 aaKnown RBP6.33□□□□□ -1.4
VPS29-212ENST00000621131 TFF2Q03403 129 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 EXOSC9Q06265 439 aaKnown RBP6.33□□□□□ -1.4
VPS29-212ENST00000621131 DTX2Q86UW9 622 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS29-212ENST00000621131 CAMKK1Q8N5S9 505 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 HPS3Q969F9 1004 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 NUP88Q99567 741 aaPredicted RBP6.33□□□□□ -1.4
VPS29-212ENST00000621131 PZPP20742 1482 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 POGZQ7Z3K3 1410 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 TRAPPC8Q9Y2L5 1435 aa6.33□□□□□ -1.4
VPS29-212ENST00000621131 FAM135AQ9P2D6 1515 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 DNAJC9-AS1A6NH13 148 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 H3BUI4 141 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 DCLK1O15075 740 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 PPM1DO15297 605 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 PRKCGP05129 697 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 PIM1P11309 404 aaPredicted RBP6.32□□□□□ -1.4
VPS29-212ENST00000621131 DRD4P21917 467 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 ABCG1P45844 678 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 CCT8P50990 548 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 PLAC9Q5JTB6 97 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 ATAT1Q5SQI0 421 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 TMEM108Q6UXF1 575 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 ZNF551Q7Z340 670 aaPredicted RBP6.32□□□□□ -1.4
VPS29-212ENST00000621131 KLHDC4Q8TBB5 520 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 ARHGEF3Q9NR81 526 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 HESX1Q9UBX0 185 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 IP6K2Q9UHH9 426 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 ANKRD6Q9Y2G4 727 aa6.32□□□□□ -1.4
VPS29-212ENST00000621131 NOP58Q9Y2X3 529 aaKnown RBP6.32□□□□□ -1.4
VPS29-212ENST00000621131 RPRD2Q5VT52 1461 aaKnown RBP6.32□□□□□ -1.4
VPS29-212ENST00000621131 ZMYM4Q5VZL5 1548 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 ALDH2P05091 517 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 PDHA1P08559 390 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 FAM163BP0C2L3 166 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 AFAP1Q8N556 730 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 ATRIPQ8WXE1 791 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 HOOK2Q96ED9 719 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 SLC35A4Q96G79 324 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 SLC46A1Q96NT5 459 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 SIN3AQ96ST3 1273 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 PADI4Q9UM07 663 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 UHRF1BP1Q6BDS2 1440 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 KDM5CP41229 1560 aa6.31□□□□□ -1.4
VPS29-212ENST00000621131 RICTORQ6R327 1708 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 ARID4BQ4LE39 1312 aaPredicted RBP6.3□□□□□ -1.4
VPS29-212ENST00000621131 DENND4BO75064 1496 aaPredicted RBP6.3□□□□□ -1.4
VPS29-212ENST00000621131 MAGI2Q86UL8 1455 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 DEPDC5O75140 1603 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 ABLIM3O94929 683 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 HNRNPCP07910 306 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS29-212ENST00000621131 CELA2AP08217 269 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 HSPA1LP34931 641 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 SOX8P57073 446 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 LONRF3Q496Y0 759 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 ICE2Q659A1 982 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 SFRP4Q6FHJ7 346 aaPredicted RBP6.3□□□□□ -1.4
VPS29-212ENST00000621131 SEMA6DQ8NFY4 1073 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 PLBD2Q8NHP8 589 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 BRIX1Q8TDN6 353 aaKnown RBP6.3□□□□□ -1.4
VPS29-212ENST00000621131 CDK5RAP3Q96JB5 506 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 AASDHPPTQ9NRN7 309 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 SERGEFQ9UGK8 458 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 SSX2IPQ9Y2D8 614 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 ANKRD30BQ9BXX2 1392 aa6.3□□□□□ -1.4
VPS29-212ENST00000621131 TARM1B6A8C7 271 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 EBLN1P0CF75 366 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 PF4V1P10720 104 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 SP2Q02086 613 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 CCDC157Q569K6 752 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 ZNF618Q5T7W0 954 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 KIAA1614Q5VZ46 1190 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 PAPD7Q5XG87 772 aaKnown RBP6.29□□□□□ -1.4
VPS29-212ENST00000621131 CELF5Q8N6W0 485 aaKnown RBP6.29□□□□□ -1.4
VPS29-212ENST00000621131 DDB2Q92466 427 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 C1GALT1C1Q96EU7 318 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 MAP3K14Q99558 947 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 CGRRF1Q99675 332 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 TTYH3Q9C0H2 523 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 SLC12A5Q9H2X9 1139 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 PCDHA6Q9UN73 950 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 TET3O43151 1660 aa6.29□□□□□ -1.4
VPS29-212ENST00000621131 KIDINS220Q9ULH0 1771 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms