RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PAEPP09466 180 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 LMO2P25791 158 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 HOXA11P31270 313 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-213ENST00000620219 CENPCQ03188 943 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 TAP1Q03518 808 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 PPP1R21Q6ZMI0 780 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 RNF139Q8WU17 664 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 ZNF518BQ9C0D4 1074 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 ADAMTS10Q9H324 1103 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 ERVK-5Q9HDB9 667 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 CYP1A2P05177 515 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 PCSK1P29120 753 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 CTGFP29279 349 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 ADCY1Q08828 1119 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 C11orf63Q6NUN7 778 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 CASC4Q6P4E1 433 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 EMBQ6PCB8 327 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 SYT15Q9BQS2 421 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 SBF1O95248 1867 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 ZNF646O15015 1829 aaPredicted RBP16.52■□□□□ 0.23
CPSF1-213ENST00000620219 NT5C1B-RDH14C9J2C7 533 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 GPR32O75388 356 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 MYZAPP0CAP1 466 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 SULT1E1P49888 294 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 CLCNKBP51801 687 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 BFSP2Q13515 415 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 RWDD4Q6NW29 188 aaKnown RBP16.52■□□□□ 0.23
CPSF1-213ENST00000620219 JAMLQ86YT9 394 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 SLC4A11Q8NBS3 891 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 JOSD2Q8TAC2 188 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 ADAM32Q8TC27 787 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 HES6Q96HZ4 224 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 AGO3Q9H9G7 860 aaKnown RBP16.52■□□□□ 0.23
CPSF1-213ENST00000620219 PRKAG2Q9UGJ0 569 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 IKBKGQ9Y6K9 419 aa16.52■□□□□ 0.23
CPSF1-213ENST00000620219 CILPO75339 1184 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 CABYRO75952 493 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 FAM187BQ17R55 369 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 FAM131BQ86XD5 332 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 HNRNPLLQ8WVV9 542 aaKnown RBP16.51■□□□□ 0.23
CPSF1-213ENST00000620219 SLITRK6Q9H5Y7 841 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 ADIGQ0VDE8 80 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 ACTRT1Q8TDG2 376 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 CCDC77Q9BR77 488 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 PTPRHQ9HD43 1115 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 KCNK9Q9NPC2 374 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 PLAAQ9Y263 795 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 Q9Y3F1 56 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 ODC1P11926 461 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 CNGA2Q16280 664 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 FAM182AQ5T1J6 154 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 TSEN2Q8NCE0 465 aaKnown RBP16.51■□□□□ 0.23
CPSF1-213ENST00000620219 NDRG1Q92597 394 aaKnown RBP16.51■□□□□ 0.23
CPSF1-213ENST00000620219 CFAP57Q96MR6 1250 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 NFKBIZQ9BYH8 718 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 SDCBP2Q9H190 292 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 CXCL16Q9H2A7 254 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 NCANO14594 1321 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 O00370 1275 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 PMM2O15305 246 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 PHF2O75151 1096 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 NCAM1P13591 858 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 BCAT1P54687 386 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 TAS2R40P59535 323 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 SLC7A14Q8TBB6 771 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 FAM172AQ8WUF8 416 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 P3H4Q92791 437 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 SAE1Q9UBE0 346 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-213ENST00000620219 KIAA1257Q9ULG3 409 aa16.51■□□□□ 0.23
CPSF1-213ENST00000620219 ARHGEF37A1IGU5 675 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 TERF2Q15554 542 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 FAM71BQ8TC56 605 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 EDEM1Q92611 657 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 STAP1Q9ULZ2 295 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 MMP8P22894 467 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 GBP2P32456 591 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-213ENST00000620219 GPS1Q13098 491 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 OVOS1Q6IE37 1185 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 MFSD7Q6UXD7 560 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 C10orf88Q9H8K7 445 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 AVENQ9NQS1 362 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-213ENST00000620219 TRAPPC3O43617 180 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 C15orf39Q6ZRI6 1047 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 RCOR2Q8IZ40 523 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 SCLYQ96I15 445 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 CALR3Q96L12 384 aaKnown RBP16.5■□□□□ 0.23
CPSF1-213ENST00000620219 SEPT5Q99719 369 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-213ENST00000620219 XYLT2Q9H1B5 865 aa16.5■□□□□ 0.23
CPSF1-213ENST00000620219 ARL5CA6NH57 179 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 ZBED1O96006 694 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 FGFR1P11362 822 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 LILRA4P59901 499 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 GABPB1Q06547 395 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 NUDT5Q9UKK9 219 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 PCDHA3Q9Y5H8 950 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 CEP350Q5VT06 3117 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 RARAP10276 462 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 BDNFP23560 247 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 BST2Q10589 180 aaKnown RBP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 DCAF12L1Q5VU92 463 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms