RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SMAD2Q15796 467 aaKnown RBP20.53■□□□□ 0.88
UPF1-209ENST00000600310 DDR2Q16832 855 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 SCN4BQ8IWT1 228 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 SMARCD1Q96GM5 515 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 CEP295NLQ96MC4 621 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 PCMTD1Q96MG8 357 aaPredicted RBP20.53■□□□□ 0.88
UPF1-209ENST00000600310 ASB2Q96Q27 587 aa20.53■□□□□ 0.88
UPF1-209ENST00000600310 WDR6Q9NNW5 1121 aaKnown RBP20.53■□□□□ 0.88
UPF1-209ENST00000600310 FAM207AQ9NSI2 230 aaPredicted RBP20.53■□□□□ 0.88
UPF1-209ENST00000600310 DNMT3BQ9UBC3 853 aaKnown RBP20.53■□□□□ 0.88
UPF1-209ENST00000600310 A0A1W2PQC6 194 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 TRIM66O15016 1216 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 EPHB6O15197 1021 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 PTPN2P17706 415 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 KCNQ1P51787 676 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 DRAP1Q14919 205 aaPredicted RBP20.52■□□□□ 0.88
UPF1-209ENST00000600310 SGO2Q562F6 1265 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 PPP1R26Q5T8A7 1209 aaPredicted RBP20.52■□□□□ 0.88
UPF1-209ENST00000600310 GRASPQ7Z6J2 395 aaPredicted RBP20.52■□□□□ 0.88
UPF1-209ENST00000600310 DNAJB7Q7Z6W7 309 aaPredicted RBP20.52■□□□□ 0.88
UPF1-209ENST00000600310 ITIH5Q86UX2 942 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 NEK11Q8NG66 645 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 GIPC2Q8TF65 315 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 PSMG2Q969U7 264 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 SPATA17Q96L03 361 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 C8orf48Q96LL4 319 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 STK33Q9BYT3 514 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 KRT82Q9NSB4 513 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 TMEM30AQ9NV96 361 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 HCFC1R1Q9NWW0 138 aa20.52■□□□□ 0.88
UPF1-209ENST00000600310 F8VP50 259 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 FOXN3O00409 490 aaPredicted RBP20.51■□□□□ 0.87
UPF1-209ENST00000600310 FAM200BP0CF97 657 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 IL9P15248 144 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 CD19P15391 556 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 ADORA2BP29275 332 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 CACNA2D1P54289 1103 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 EPHA5P54756 1037 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 POLR2FP61218 127 aaKnown RBP20.51■□□□□ 0.87
UPF1-209ENST00000600310 RAPGEF1Q13905 1077 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 SDHAF4Q5VUM1 108 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 GAS2L3Q86XJ1 694 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 TFAP2BQ92481 460 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 LRRC3Q9BY71 257 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 GPR88Q9GZN0 384 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 RBSNQ9H1K0 784 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 POMKQ9H5K3 350 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 CSNK1G1Q9HCP0 422 aa20.51■□□□□ 0.87
UPF1-209ENST00000600310 DMAP1Q9NPF5 467 aaPredicted RBP20.51■□□□□ 0.87
UPF1-209ENST00000600310 AVENQ9NQS1 362 aaPredicted RBP20.51■□□□□ 0.87
UPF1-209ENST00000600310 O00370 1275 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 AP1G2O75843 785 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 RHOP08100 348 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 CSH1P0DML2 217 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 CSH2P0DML3 217 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 BMP1P13497 986 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 ANXA13P27216 316 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 USP8P40818 1118 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 NTHL1P78549 312 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 FAM71AQ8IYT1 594 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 HS6ST3Q8IZP7 471 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 LEMD2Q8NC56 503 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 ZMIZ2Q8NF64 920 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 GPR152Q8TDT2 470 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 SMOQ99835 787 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 ZSWIM1Q9BR11 485 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 CORO1BQ9BR76 489 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 DUSP16Q9BY84 665 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 IFNKQ9P0W0 207 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 CLUHO75153 1309 aa20.5■□□□□ 0.87
UPF1-209ENST00000600310 SLC38A8A6NNN8 435 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 HMGA1P17096 107 aaKnown RBP20.49■□□□□ 0.87
UPF1-209ENST00000600310 STILQ15468 1287 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 CNGA2Q16280 664 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 PABPC1LQ4VXU2 614 aaKnown RBP20.49■□□□□ 0.87
UPF1-209ENST00000600310 TMC8Q8IU68 726 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 ANKRD52Q8NB46 1076 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 KCNK16Q96T55 309 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 PHF7Q9BWX1 381 aaPredicted RBP20.49■□□□□ 0.87
UPF1-209ENST00000600310 ASAH2Q9NR71 780 aa20.49■□□□□ 0.87
UPF1-209ENST00000600310 F8VZ95 297 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 CYP26A1O43174 497 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 BEST1O76090 585 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 PNMA6AP0CW24 399 aaPredicted RBP20.48■□□□□ 0.87
UPF1-209ENST00000600310 NPR3P17342 541 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 FSHRP23945 695 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 BRD2P25440 801 aaKnown RBP20.48■□□□□ 0.87
UPF1-209ENST00000600310 PBX1P40424 430 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 MAP3K7CLP57077 242 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 JAM2P57087 298 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 MTMR3Q13615 1198 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 TAF12Q16514 161 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 PTPN21Q16825 1174 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 GOLGA7BQ2TAP0 167 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 CYP4A22Q5TCH4 519 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 LCLAT1Q6UWP7 414 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 CLEC20AQ6ZU45 233 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 PDZD4Q76G19 769 aaPredicted RBP20.48■□□□□ 0.87
UPF1-209ENST00000600310 MYRFLQ96LU7 910 aa20.48■□□□□ 0.87
UPF1-209ENST00000600310 ZNF334Q9HCZ1 680 aaPredicted RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms