RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 DGKEP52429 567 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 ZXDBP98169 803 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 TSPY1Q01534 308 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 POU5F1Q01860 360 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 KCNA1Q09470 495 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 USP4Q13107 963 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 PSMD2Q13200 908 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 STK38Q15208 465 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 NFE2Q16621 373 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 SLFN12LQ6IEE8 588 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 ZNF720Q7Z2F6 126 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 OSTM1Q86WC4 334 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 ARL14EPQ8N8R7 260 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 C1orf127Q8N9H9 656 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 LEO1Q8WVC0 666 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 CALML4Q96GE6 196 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 TRMT2BQ96GJ1 504 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 USP28Q96RU2 1077 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 ACBD6Q9BR61 282 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 ZMIZ1Q9ULJ6 1067 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 ZNF638Q14966 1978 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 CACNA1EQ15878 2313 aa17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 FASNP49327 2511 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-215ENST00000597649 C2orf78A6NCI8 922 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 PATE3B3GLJ2 98 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 K7EQS6 105 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 BCKDHBP21953 392 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 POLR2BP30876 1174 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 GBP1P32455 592 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 GAB4Q2WGN9 574 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 SH3PXD2AQ5TCZ1 1133 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 PMS2CLQ68D20 193 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 UNQ6494/PRO21346Q6UXR6 183 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 SH3RF2Q8TEC5 729 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 USP33Q8TEY7 942 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 POMGNT1Q8WZA1 660 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 ATP2A3Q93084 1043 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 STRA6Q9BX79 667 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 TMEM121BQ9BXQ6 578 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 TPSD1Q9BZJ3 242 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 ABCB6Q9NP58 842 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 DDX43Q9NXZ2 648 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 AGAP1Q9UPQ3 857 aa17.66■□□□□ 0.42
SHKBP1-215ENST00000597649 FREM2Q5SZK8 3169 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 OBSL1O75147 1896 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 TRAV19A0A0A6YYK7 116 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 TBCAO75347 108 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 PPP1R37O75864 691 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 ITGB3P05106 788 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 USP17L7P0C7H9 530 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 OPRD1P41143 372 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 IFNAR2P48551 515 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 RPL10AP62906 217 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 KRT85P78386 507 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 TFAMQ00059 246 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 DNM1Q05193 864 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 FOXC1Q12948 553 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 C2orf27AQ580R0 203 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 INTS6LQ5JSJ4 861 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 KDF1Q8NAX2 398 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 ACDQ96AP0 544 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 FAM213AQ9BRX8 229 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 TMEM206Q9H813 350 aa17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 UXTQ9UBK9 157 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-215ENST00000597649 ASCC3Q8N3C0 2202 aaKnown RBP17.64■□□□□ 0.42
SHKBP1-215ENST00000597649 IL18RAPO95256 599 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 CKMP06732 381 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 HNRNPLP14866 589 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 SEC13P55735 322 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 IRX4P78413 519 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 ZNF252P-AS1Q0IIN9 211 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 MESP2Q0VG99 397 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 USP39Q53GS9 565 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 DAB2IPQ5VWQ8 1189 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 RASSF3Q86WH2 238 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 SFR1Q86XK3 245 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 NT5DC4Q86YG4 428 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 SFTPA1Q8IWL2 248 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 TSTD1Q8NFU3 115 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 EXOC4Q96A65 974 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 ZNF560Q96MR9 790 aa17.64■□□□□ 0.41
SHKBP1-215ENST00000597649 ITPR1Q14643 2758 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 TULP1O00294 542 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 GABRDO14764 452 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 KHNYNO15037 678 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 HUS1O60921 280 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 ATP2C2O75185 946 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 YEATS4O95619 227 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 CHRM1P11229 460 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 HOXB3P14651 431 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 HDCP19113 662 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 ABCD1P33897 745 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 PNPLA4P41247 253 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 NASPP49321 788 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 SLC39A14Q15043 492 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 POSTNQ15063 836 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 CFAP221Q4G0U5 840 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 ANO7Q6IWH7 933 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 FAM171BQ6P995 826 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 USP49Q70CQ1 688 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms