RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 COL26A1Q96A83 441 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 SLC22A12Q96S37 553 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 GTPBP2Q9BX10 602 aaKnown RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 ASB7Q9H672 318 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 POLMQ9NP87 494 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 TMEM74BQ9NUR3 256 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 BCCIPQ9P287 314 aaKnown RBP eCLIP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 PILRBQ9UKJ0 227 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 SLC6A14Q9UN76 642 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 ARHGAP26Q9UNA1 814 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 PCNX2A6NKB5 2137 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 ATXN2Q99700 1313 aaKnown RBP10.9□□□□□ -0.66
TRIM28-210ENST00000597618 APC2O95996 2303 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 ACACAQ13085 2346 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 CAPNS1P04632 268 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 PRPHP41219 470 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 SCAPQ12770 1279 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 ZRSR1Q15695 479 aaKnown RBP10.9□□□□□ -0.66
TRIM28-210ENST00000597618 DDR2Q16832 855 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 DUOXA1Q1HG43 343 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 SV2CQ496J9 727 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 EOGTQ5NDL2 527 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 SDHAF4Q5VUM1 108 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 C19orf48Q6RUI8 117 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 TMEM92Q6UXU6 159 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 ALLCQ8N6M5 410 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 SYT2Q8N9I0 419 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-210ENST00000597618 ZNF560Q96MR9 790 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 CYP2S1Q96SQ9 504 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 MMTAG2Q9BU76 263 aaKnown RBP10.9□□□□□ -0.66
TRIM28-210ENST00000597618 TMLHEQ9NVH6 421 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 DPP3Q9NY33 737 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 GCNT4Q9P109 453 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 MBD1Q9UIS9 605 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-210ENST00000597618 BPTFQ12830 3046 aa10.9□□□□□ -0.66
TRIM28-210ENST00000597618 MYO16Q9Y6X6 1858 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 MYMKA6NI61 221 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 KPNA7A9QM74 516 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 K7ENM7 598 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 AP5Z1O43299 807 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 KLF8O95600 359 aaPredicted RBP10.89□□□□□ -0.67
TRIM28-210ENST00000597618 SERPINF2P08697 491 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 HNRNPLP14866 589 aaKnown RBP eCLIP10.89□□□□□ -0.67
TRIM28-210ENST00000597618 ITPKAP23677 461 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 ABCD1P33897 745 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 PNPLA4P41247 253 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 SLC12A3P55017 1021 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 FAM193AP78312 1265 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 COL28A1Q2UY09 1125 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 MAP7D1Q3KQU3 841 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 HYIQ5T013 277 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 DTHD1Q6ZMT9 781 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 KIAA1958Q8N8K9 716 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 ARL14EPQ8N8R7 260 aaPredicted RBP10.89□□□□□ -0.67
TRIM28-210ENST00000597618 IL17RCQ8NAC3 791 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 TXNDC5Q8NBS9 432 aaKnown RBP10.89□□□□□ -0.67
TRIM28-210ENST00000597618 FBXO18Q8NFZ0 1043 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 SPATA18Q8TC71 538 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 HMGB4Q8WW32 186 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 ACBD6Q9BR61 282 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 LINC00597Q9H2U6 94 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 CCDC86Q9H6F5 360 aaKnown RBP10.89□□□□□ -0.67
TRIM28-210ENST00000597618 CAPN10Q9HC96 672 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 ODF2LQ9ULJ1 636 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 GON4LQ3T8J9 2241 aa10.89□□□□□ -0.67
TRIM28-210ENST00000597618 DENND4CQ5VZ89 1909 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 TCRBV21S2A2A0A5A6 115 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 C2orf78A6NCI8 922 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 EIF4E1BA6NMX2 242 aaKnown RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 SGK1O00141 431 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 OBSL1O75147 1896 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 APODP05090 189 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 CYP17A1P05093 508 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 PLA2G4BP0C869 781 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 PFKLP17858 780 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 HDCP19113 662 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 CYP2F1P24903 491 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 EIF2DP41214 584 aaKnown RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 ACOT2P49753 483 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 MYL7Q01449 175 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 POU5F1Q01860 360 aaKnown RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 ST3GAL1Q11201 340 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 SLC14A1Q13336 389 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 IL17AQ16552 155 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 GAB4Q2WGN9 574 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 CFAP221Q4G0U5 840 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 ZC2HC1CQ53FD0 456 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 INTS6LQ5JSJ4 861 aaKnown RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 SLC36A4Q6YBV0 504 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 PDCL2Q8N4E4 241 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 MINDY1Q8N5J2 469 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 CDK5RAP3Q96JB5 506 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 PNKPQ96T60 521 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 FSCN3Q9NQT6 498 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 DDX43Q9NXZ2 648 aaKnown RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 PCDHB6Q9Y5E3 794 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 ZNF638Q14966 1978 aaKnown RBP10.88□□□□□ -0.67
TRIM28-210ENST00000597618 KALRNO60229 2985 aa10.88□□□□□ -0.67
TRIM28-210ENST00000597618 MAST4O15021 2626 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 NPHP3-ACAD11A0A0J9YXS1 232 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms