RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PIK3R5Q8WYR1 880 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 MYLPFQ96A32 169 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 C16orf45Q96MC5 204 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-209ENST00000597423 SAMD11Q96NU1 681 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 C11orf70Q9BRQ4 267 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 SLC4A5Q9BY07 1137 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 ABCB6Q9NP58 842 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.1■□□□□ 0.17
TRIM28-209ENST00000597423 MRPL17Q9NRX2 175 aaKnown RBP16.1■□□□□ 0.17
TRIM28-209ENST00000597423 PAXBP1Q9Y5B6 917 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 PCDHB5Q9Y5E4 795 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 DUSP10Q9Y6W6 482 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 NCANO14594 1321 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 FGF18O76093 207 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 RB1P06400 928 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 PLA2G4AP47712 749 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 GABRB2P47870 512 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 HADHBP55084 474 aaKnown RBP16.09■□□□□ 0.17
TRIM28-209ENST00000597423 DSG1Q02413 1049 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 GPR17Q13304 367 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 SHHQ15465 462 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 PSMD5Q16401 504 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 RTP2Q5QGT7 225 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 DNAJC24Q6P3W2 148 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 TAS1R1Q7RTX1 841 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 TMEM110Q86TL2 294 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 FAM35AQ86V20 835 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 TMEM173Q86WV6 379 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-209ENST00000597423 RNF168Q8IYW5 571 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-209ENST00000597423 BCL7CQ8WUZ0 217 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-209ENST00000597423 KCTD13Q8WZ19 329 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 PKMYT1Q99640 499 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 LPIN3Q9BQK8 851 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 NUP85Q9BW27 656 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 LRRC4Q9HBW1 653 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 MTRRQ9UBK8 725 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 TRIM10Q9UDY6 481 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 TFR2Q9UP52 801 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 LZTS1Q9Y250 596 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 PCDHA11Q9Y5I1 949 aa16.09■□□□□ 0.17
TRIM28-209ENST00000597423 ALPK3Q96L96 1907 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 MYO1FO00160 1098 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 CLDN5O00501 218 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 TBC1D4O60343 1298 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 MTA2O94776 668 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 MOCS3O95396 460 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 CPB1P15086 417 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 DESP17661 470 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 RRM1P23921 792 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 CASQ1P31415 396 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 CTNNB1P35222 781 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 ARPP19P56211 112 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 PTP4A2Q12974 167 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 CFAP221Q4G0U5 840 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 PLEKHA7Q6IQ23 1121 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 PMF1Q6P1K2 205 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 DCUN1D2Q6PH85 259 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 VSTM1Q6UX27 236 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 PAQR9Q6ZVX9 377 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 LRRTM3Q86VH5 581 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 DNAAF5Q86Y56 855 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 VPS52Q8N1B4 723 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 FBXO22Q8NEZ5 403 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 KIF18AQ8NI77 898 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 SPPL2BQ8TCT7 592 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 SELENOOQ9BVL4 669 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 CSNK1G1Q9HCP0 422 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 DMAP1Q9NPF5 467 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-209ENST00000597423 KRT82Q9NSB4 513 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 MAFFQ9ULX9 164 aa16.08■□□□□ 0.16
TRIM28-209ENST00000597423 FNDC1Q4ZHG4 1894 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-209ENST00000597423 A0A0U1RQJ8 604 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-209ENST00000597423 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-209ENST00000597423 TRIM66O15016 1216 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 SART1O43290 800 aaKnown RBP16.07■□□□□ 0.16
TRIM28-209ENST00000597423 BUB1O43683 1085 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 LPXNO60711 386 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 FBXO21O94952 628 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 KRT3P12035 628 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 BDNFP23560 247 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 GRIK1P39086 918 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 MAGEA11P43364 429 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 RPL34P49207 117 aaKnown RBP16.07■□□□□ 0.16
TRIM28-209ENST00000597423 GSCP56915 257 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-209ENST00000597423 MAP3K7CLP57077 242 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 UBE3AQ05086 875 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 MAMLD1Q13495 774 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 PTPN20Q4JDL3 420 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 C9orf50Q5SZB4 431 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 TPGS2Q68CL5 300 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 OR6B2Q6IFH4 312 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 SLC8B1Q6J4K2 584 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 PIGZQ86VD9 579 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 SIX6OS1Q8N1H7 587 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 KLHL23Q8NBE8 558 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 C3orf20Q8ND61 904 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 FEZF2Q8TBJ5 459 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 ZNF564Q8TBZ8 553 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-209ENST00000597423 ATRIPQ8WXE1 791 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms