RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 GPC5P78333 572 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 SIGLEC14Q08ET2 396 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 VEPH1Q14D04 833 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 MAPRE1Q15691 268 aaKnown RBP11.86□□□□□ -0.51
VRK3-210ENST00000596121 TMEM31Q5JXX7 168 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 HFE2Q6ZVN8 426 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 FAM35AQ86V20 835 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 ARHGEF19Q8IW93 802 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 SLC4A11Q8NBS3 891 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 EHBP1Q8NDI1 1231 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 SLC2A14Q8TDB8 520 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 SPATA17Q96L03 361 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 C8orf48Q96LL4 319 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 SMOQ99835 787 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 C1QTNF1Q9BXJ1 281 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 IMPG2Q9BZV3 1241 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 CISHQ9NSE2 258 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 FAM49BQ9NUQ9 324 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 MAGED2Q9UNF1 606 aaPredicted RBP11.86□□□□□ -0.51
VRK3-210ENST00000596121 DUSP12Q9UNI6 340 aa11.86□□□□□ -0.51
VRK3-210ENST00000596121 ZDBF2Q9HCK1 2354 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 TNFRSF10BO14763 440 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 ECI2O75521 394 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 PRAMEF12O95522 483 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 MBD3O95983 291 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 CSH1P0DML2 217 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 CSH2P0DML3 217 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 ACO1P21399 889 aaKnown RBP11.85□□□□□ -0.51
VRK3-210ENST00000596121 APBA1Q02410 837 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 CUL2Q13617 745 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 ZNF394Q53GI3 561 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 HSP90AA4PQ58FG1 418 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 WDR44Q5JSH3 913 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 GPR158Q5T848 1215 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 VITQ6UXI7 678 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 C11orf57Q6ZUT1 292 aaPredicted RBP11.85□□□□□ -0.51
VRK3-210ENST00000596121 UBALD2Q8IYN6 164 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 ZSCAN18Q8TBC5 510 aaPredicted RBP11.85□□□□□ -0.51
VRK3-210ENST00000596121 SMARCD2Q92925 531 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 NXPE3Q969Y0 559 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 TRMT2BQ96GJ1 504 aaKnown RBP11.85□□□□□ -0.51
VRK3-210ENST00000596121 TNIP3Q96KP6 325 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 SLC22A12Q96S37 553 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 NT5C1AQ9BXI3 368 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 SMG9Q9H0W8 520 aaKnown RBP11.85□□□□□ -0.51
VRK3-210ENST00000596121 TRPV4Q9HBA0 871 aa11.85□□□□□ -0.51
VRK3-210ENST00000596121 SAMSN1Q9NSI8 373 aaKnown RBP11.85□□□□□ -0.51
VRK3-210ENST00000596121 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.85□□□□□ -0.51
VRK3-210ENST00000596121 COL4A3Q01955 1670 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 GREB1Q4ZG55 1949 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 KRBA1A5PL33 1030 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 HHLA1C9JL84 531 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 RNF225M0QZC1 329 aaPredicted RBP11.84□□□□□ -0.51
VRK3-210ENST00000596121 P4HA2O15460 535 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 AP1G2O75843 785 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CALCAP01258 141 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 AFPP02771 609 aaKnown RBP11.84□□□□□ -0.51
VRK3-210ENST00000596121 CFHP08603 1231 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CCDC192P0DO97 292 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 NPR3P17342 541 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 ADORA2BP29275 332 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CDC25CP30307 473 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 PGFP49763 221 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 GRM2Q14416 872 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 TAF12Q16514 161 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CCDC183Q5T5S1 534 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 TXNDC8Q6A555 127 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 PHLDB3Q6NSJ2 640 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 DPY19L2P1Q6NXN4 242 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 MTSS1LQ765P7 747 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 RRAGAQ7L523 313 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CREBRFQ8IUR6 639 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 ARID3BQ8IVW6 561 aaPredicted RBP11.84□□□□□ -0.51
VRK3-210ENST00000596121 CCDC150Q8NCX0 1101 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 SCAMP5Q8TAC9 235 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 RIN3Q8TB24 985 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 ELSPBP1Q96BH3 223 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CYFIP2Q96F07 1278 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 FAXDC2Q96IV6 333 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 KREMEN1Q96MU8 473 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 CYP2S1Q96SQ9 504 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 HNRNPABQ99729 332 aaKnown RBP11.84□□□□□ -0.51
VRK3-210ENST00000596121 ZSWIM1Q9BR11 485 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 MED10Q9BTT4 135 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 TTLL2Q9BWV7 592 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 INTS2Q9H0H0 1204 aaKnown RBP11.84□□□□□ -0.51
VRK3-210ENST00000596121 THAP9Q9H5L6 903 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 TASP1Q9H6P5 420 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 KRT82Q9NSB4 513 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 RAPGEFL1Q9UHV5 662 aa11.84□□□□□ -0.51
VRK3-210ENST00000596121 C2orf78A6NCI8 922 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 HEPACAM2A8MVW5 462 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 PRR33A8MZF0 331 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 TRIM66O15016 1216 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 FGFR1OPO95684 399 aaKnown RBP11.83□□□□□ -0.52
VRK3-210ENST00000596121 FGF19O95750 216 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 SRFP11831 508 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 SLC9A1P19634 815 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 MAP3K7CLP57077 242 aa11.83□□□□□ -0.52
VRK3-210ENST00000596121 MIIPQ5JXC2 388 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms