RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 BCO2Q9BYV7 579 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 NIF3L1Q9GZT8 377 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 MAGED2Q9UNF1 606 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-206ENST00000595974 BICDL2A1A5D9 508 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 SOBPA7XYQ1 873 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 BIN1O00499 593 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 F11P03951 625 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TRIM21P19474 475 aaKnown RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 GRIK1P39086 918 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 VIPR2P41587 438 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 PRKCQQ04759 706 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 GRM2Q14416 872 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 MLF2Q15773 248 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 DCAF17Q5H9S7 520 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TCERG1LQ5VWI1 586 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 KLHL10Q6JEL2 608 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TTI2Q6NXR4 508 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 CLEC17AQ6ZS10 378 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TMEM150AQ86TG1 271 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 UNC93AQ86WB7 457 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 ARID3BQ8IVW6 561 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 MFSD6LQ8IWD5 586 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TMEM105Q8N8V8 129 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 FBXL13Q8NEE6 735 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 MRPS31Q92665 395 aaKnown RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 FAXDC2Q96IV6 333 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 C8orf48Q96LL4 319 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TRMT61BQ9BVS5 477 aaKnown RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 BRD9Q9H8M2 597 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 TBC1D17Q9HA65 648 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 CYP3A43Q9HB55 503 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 OBP2AQ9NY56 170 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 EHD2Q9NZN4 543 aa17.26■□□□□ 0.35
TRIM28-206ENST00000595974 ARMCX3Q9UH62 379 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-206ENST00000595974 NCANO14594 1321 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 HEPACAM2A8MVW5 462 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 PPP1R3GB7ZBB8 358 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 DPYSL4O14531 572 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 TADA3O75528 432 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 STARD6P59095 220 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 INCA1Q0VD86 236 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 NELFBQ8WX92 580 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 IRF7Q92985 503 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 ZNF518BQ9C0D4 1074 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 APOBEC3GQ9HC16 384 aaKnown RBP17.25■□□□□ 0.35
TRIM28-206ENST00000595974 METTL14Q9HCE5 456 aaKnown RBP17.25■□□□□ 0.35
TRIM28-206ENST00000595974 TRPV5Q9NQA5 729 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 KIAA1468Q9P260 1216 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 CTNND2Q9UQB3 1225 aa17.25■□□□□ 0.35
TRIM28-206ENST00000595974 F8VP50 259 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 PRAMEF12O95522 483 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 NDST1P52848 882 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 FCHO2Q0JRZ9 810 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 PAK1Q13153 545 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 SLC44A4Q53GD3 710 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 IER5LQ5T953 404 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 DENND5BQ6ZUT9 1274 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 FILIP1Q7Z7B0 1213 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 FAM35AQ86V20 835 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 YAF2Q8IY57 180 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 CMTM8Q8IZV2 173 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 RSPRY1Q96DX4 576 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 DUSP9Q99956 384 aaKnown RBP17.24■□□□□ 0.35
TRIM28-206ENST00000595974 TTLL2Q9BWV7 592 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 SLC46A2Q9BY10 475 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 B3GNT5Q9BYG0 378 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 RAB20Q9NX57 234 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 HMGXB4Q9UGU5 601 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 MYO16Q9Y6X6 1858 aa17.24■□□□□ 0.35
TRIM28-206ENST00000595974 CLDN5O00501 218 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 STK25O00506 426 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 ZNF263O14978 683 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 GDI1P31150 447 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 AVPR1AP37288 418 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CAMK4Q16566 473 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CCDC40Q4G0X9 1142 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CBWD6Q4V339 395 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CBWD3Q5JTY5 395 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CBWD5Q5RIA9 395 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 FRMD5Q7Z6J6 570 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 ACOT1Q86TX2 421 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 MON1AQ86VX9 555 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CRYBG2Q8N1P7 616 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 PRSS33Q8NF86 280 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 SEMA4DQ92854 862 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 SLC35C1Q96A29 364 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 SMARCD1Q96GM5 515 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 MED10Q9BTT4 135 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 DDX23Q9BUQ8 820 aaKnown RBP17.23■□□□□ 0.35
TRIM28-206ENST00000595974 DNAI2Q9GZS0 605 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 FAM124BQ9H5Z6 455 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-206ENST00000595974 KIF9Q9HAQ2 790 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.23■□□□□ 0.359e-7■■□□□ 13.4
TRIM28-206ENST00000595974 COQ4Q9Y3A0 265 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 COL4A3Q01955 1670 aa17.23■□□□□ 0.35
TRIM28-206ENST00000595974 CHADO15335 359 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 GALR2O43603 387 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-206ENST00000595974 PLA2G5P39877 138 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 CACNA2D1P54289 1103 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 PTPN5P54829 565 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms