RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 F8VP50 259 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 PRKCSHP14314 528 aaPredicted RBP12.64□□□□□ -0.39
LIG3-213ENST00000590630 MTIF2P46199 727 aaKnown RBP12.64□□□□□ -0.39
LIG3-213ENST00000590630 ZXDAP98168 799 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 ORC1Q13415 861 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 TEAD2Q15562 447 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 KLHL40Q2TBA0 621 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 ARHGAP15Q53QZ3 475 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 SDHAF4Q5VUM1 108 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 CAVIN1Q6NZI2 390 aaKnown RBP12.64□□□□□ -0.39
LIG3-213ENST00000590630 FAM35AQ86V20 835 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 FUKQ8N0W3 1084 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 WHAMMQ8TF30 809 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 MCRS1Q96EZ8 462 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 TWNKQ96RR1 684 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 MED10Q9BTT4 135 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 ATXN3LQ9H3M9 355 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 SLITRK6Q9H5Y7 841 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 IL21Q9HBE4 155 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 DMAP1Q9NPF5 467 aaPredicted RBP12.64□□□□□ -0.39
LIG3-213ENST00000590630 NFE2L3Q9Y4A8 694 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 NUMBLQ9Y6R0 609 aa12.64□□□□□ -0.39
LIG3-213ENST00000590630 GTPBP10A4D1E9 387 aaKnown RBP12.63□□□□□ -0.39
LIG3-213ENST00000590630 SOBPA7XYQ1 873 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 CLDN5O00501 218 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 NRG2O14511 850 aaPredicted RBP12.63□□□□□ -0.39
LIG3-213ENST00000590630 ECI2O75521 394 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 CCDC130P13994 396 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 GJA1P17302 382 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 EEF1GP26641 437 aaKnown RBP12.63□□□□□ -0.39
LIG3-213ENST00000590630 GCNT1Q02742 428 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 SIGLEC14Q08ET2 396 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 LRMPQ12912 555 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 MAN2A1Q16706 1144 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 FAM78AQ5JUQ0 283 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 PARM1Q6UWI2 310 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 DENND5BQ6ZUT9 1274 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 PAQR9Q6ZVX9 377 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 PPM1KQ8N3J5 372 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 SLC44A3Q8N4M1 653 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 C12orf29Q8N999 325 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 EHBP1Q8NDI1 1231 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 SLC2A14Q8TDB8 520 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 RSAD2Q8WXG1 361 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 FGF14Q92915 247 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 SMARCD2Q92925 531 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 CYFIP2Q96F07 1278 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 TMEM176AQ96HP8 235 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 ASB16Q96NS5 453 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 HNRNPABQ99729 332 aaKnown RBP12.63□□□□□ -0.39
LIG3-213ENST00000590630 INTS2Q9H0H0 1204 aaKnown RBP12.63□□□□□ -0.39
LIG3-213ENST00000590630 TRPV4Q9HBA0 871 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 KRT82Q9NSB4 513 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 FAM49BQ9NUQ9 324 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 TMEM30AQ9NV96 361 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 GCNT4Q9P109 453 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 MAGED2Q9UNF1 606 aaPredicted RBP12.63□□□□□ -0.39
LIG3-213ENST00000590630 DUSP12Q9UNI6 340 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 MYO16Q9Y6X6 1858 aa12.63□□□□□ -0.39
LIG3-213ENST00000590630 HELZP42694 1942 aaKnown RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 KCNJ18B7U540 433 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 AP1G2O75843 785 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 LETM1O95202 739 aaPredicted RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 F11P03951 625 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 FAM200BP0CF97 657 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 DDX6P26196 483 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIG3-213ENST00000590630 WEE1P30291 646 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 CACNA2D1P54289 1103 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 RAD23BP54727 409 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 TYRO3Q06418 890 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 KCNJ12Q14500 433 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 ZNF394Q53GI3 561 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 TCP11X2Q5H9J9 407 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 GPR158Q5T848 1215 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 TRIM65Q6PJ69 517 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 POTEHQ6S545 545 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 GBP6Q6ZN66 633 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 TRIM67Q6ZTA4 783 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 TMEM150AQ86TG1 271 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 UBR7Q8N806 425 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 SLC4A11Q8NBS3 891 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 STKLD1Q8NE28 680 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 ZSCAN18Q8TBC5 510 aaPredicted RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 MRPS31Q92665 395 aaKnown RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 JAKMIP2Q96AA8 810 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 E2F7Q96AV8 911 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 ELSPBP1Q96BH3 223 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 FAM81BQ96LP2 452 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 ZSWIM3Q96MP5 696 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 TUBGCP2Q9BSJ2 902 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 TTLL2Q9BWV7 592 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 NAT10Q9H0A0 1025 aaKnown RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 TASP1Q9H6P5 420 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 ZFP14Q9HCL3 533 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 CSNK1G1Q9HCP0 422 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 SAMSN1Q9NSI8 373 aaKnown RBP12.62□□□□□ -0.39
LIG3-213ENST00000590630 ZDBF2Q9HCK1 2354 aa12.62□□□□□ -0.39
LIG3-213ENST00000590630 GPR37L1O60883 481 aa12.61□□□□□ -0.39
LIG3-213ENST00000590630 RTN3O95197 1032 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms