RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	MREG	Q8N565	214 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	CPXM1	Q96SM3	734 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	WNT8A	Q9H1J5	351 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	TSPYL2	Q9H2G4	693 aa	Predicted RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	MRPL47	Q9HD33	250 aa	Known RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	PARVA	Q9NVD7	372 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	TTC7A	Q9ULT0	858 aa	Predicted RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	KLHL33	A6NCF5	533 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	HMGB1P1	B2RPK0	211 aa	Predicted RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318		M0QYV0	167 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	TH	P07101	528 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	PFKM	P08237	780 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	MYBL2	P10244	700 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	SCNN1G	P51170	649 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	CLNS1A	P54105	237 aa	Known RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	RPL7A	P62424	266 aa	Known RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	PDCL	Q13371	301 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	TTMP	Q5BVD1	217 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	RNF187	Q5TA31	235 aa	Predicted RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	CYP4A22	Q5TCH4	519 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	ACOT1	Q86TX2	421 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	ZNF598	Q86UK7	904 aa	Known RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	RTN4RL1	Q86UN2	441 aa	Predicted RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	UNC93A	Q86WB7	457 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	FAM126B	Q8IXS8	530 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	16.23	■□□□□ 0.19	4e-8	■■■■■ 36.3
DDX39A-209	ENST00000589318	RSRC1	Q96IZ7	334 aa	Known RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	CCDC114	Q96M63	670 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	16.23	■□□□□ 0.19	1e-9	■■□□□ 11.7
DDX39A-209	ENST00000589318	DPEP3	Q9H4B8	488 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	SLC38A7	Q9NVC3	462 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	TSPAN16	Q9UKR8	245 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	TMEM191C	A6NGB0	347 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	PGRMC1	O00264	195 aa	Known RBP	16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	SPOP	O43791	374 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	PROSC	O94903	275 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	ZNF252P-AS1	Q0IIN9	211 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	PKDCC	Q504Y2	493 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	TLDC1	Q6P9B6	456 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	NLRP14	Q86W24	1093 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	FEZF2	Q8TBJ5	459 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	LINC01599	Q8WXQ3	324 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	DEFB118	Q96PH6	123 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	RSAD1	Q9HA92	442 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	PCDHA3	Q9Y5H8	950 aa		16.22	■□□□□ 0.19
DDX39A-209	ENST00000589318	MYC	P01106	439 aa	Predicted RBP	16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	LMO2	P25791	158 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	GRIK3	Q13003	919 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	ZNF211	Q13398	564 aa	Predicted RBP	16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	CYB5D1	Q6P9G0	228 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	ECHDC2	Q86YB7	292 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	C3orf58	Q8NDZ4	430 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	ARMC2	Q8NEN0	867 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	OR6B3	Q8NGW1	331 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	UBA3	Q8TBC4	463 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	MYCBPAP	Q8TBZ2	947 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	RNPC3	Q96LT9	517 aa	Known RBP	16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	CCT8L2	Q96SF2	557 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	LPIN3	Q9BQK8	851 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	STIM2	Q9P246	746 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	OGDHL	Q9ULD0	1010 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318		A8MXQ7	604 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	ERBB2	P04626	1255 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	MDH1	P40925	334 aa	Known RBP	16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	SLC1A1	P43005	524 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	GABRB2	P47870	512 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	CLCNKB	P51801	687 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	OGDH	Q02218	1023 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	GPNMB	Q14956	572 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	STIL	Q15468	1287 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	LACTB2	Q53H82	288 aa	Predicted RBP	16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	DAB2IP	Q5VWQ8	1189 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	AADACL2	Q6P093	401 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	DNAJC24	Q6P3W2	148 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	DPH6	Q7L8W6	267 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	OSTM1	Q86WC4	334 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	TTC30A	Q86WT1	665 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	FUK	Q8N0W3	1084 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	CRYBG2	Q8N1P7	616 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	TOP6BL	Q8N6T0	577 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	UBL4B	Q8N7F7	174 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	APPL2	Q8NEU8	664 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	PAAF1	Q9BRP4	392 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	LRRC1	Q9BTT6	524 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	BEGAIN	Q9BUH8	593 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	RGS18	Q9NS28	235 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	WBP1L	Q9NX94	342 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318	STRIP2	Q9ULQ0	834 aa		16.21	■□□□□ 0.19
DDX39A-209	ENST00000589318		C9IYK1	514 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	CCL5	P13501	91 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	NR1D1	P20393	614 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	GOLGA7B	Q2TAP0	167 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	ARHGAP17	Q68EM7	881 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	XYLT1	Q86Y38	959 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	ADGRF2	Q8IZF7	708 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	RNF169	Q8NCN4	708 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	CCHCR1	Q8TD31	782 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	HDAC7	Q8WUI4	952 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	MCEE	Q96PE7	176 aa		16.2	■□□□□ 0.18

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms