RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 ABHD2P08910 425 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 DESP17661 470 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 MYL6P60660 151 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 FOXK2Q01167 660 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TNFAIP2Q03169 654 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ORC1Q13415 861 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ACAP1Q15027 740 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 LONRF1Q17RB8 773 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ZNF568Q3ZCX4 644 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 C2CD6Q53TS8 623 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CELF3Q5SZQ8 465 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ATF7IP2Q5U623 682 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 WDR78Q5VTH9 848 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 KAZNQ674X7 775 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 GPAT2Q6NUI2 795 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 EXOC3L1Q86VI1 746 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CPNE8Q86YQ8 564 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 RHPN2Q8IUC4 686 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TTC39CQ8N584 583 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 NIPA2Q8N8Q9 360 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TRPM4Q8TD43 1214 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ZNF526Q8TF50 670 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 MCEEQ96PE7 176 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ZNF317Q96PQ6 595 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 RBM15Q96T37 977 aaKnown RBP eCLIP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 PCYT2Q99447 389 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 LHX5Q9H2C1 402 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 FAM124BQ9H5Z6 455 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 RPF1Q9H9Y2 349 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 UBN1Q9NPG3 1134 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 SENP1Q9P0U3 644 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 SCHIP1Q9P0W5 487 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TELO2Q9Y4R8 837 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 COL11A1P12107 1806 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 PARP14Q460N5 1801 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CCT8L1PA6NM43 557 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 INO80B-WBP1J3KQ70 363 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 LIASO43766 372 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 SUN1O94901 812 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 KRT3P12035 628 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 DNAJA1P31689 397 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CDH5P33151 784 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 MAGEA4P43358 317 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 VPS41P49754 854 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 WNT7BP56706 349 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TAS2R40P59535 323 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 RACK1P63244 317 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 MORF4L2Q15014 288 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CNGA2Q16280 664 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 LY6KQ17RY6 165 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 P3H1Q32P28 736 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 LACTB2Q53H82 288 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ZNF667Q5HYK9 610 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ZBTB41Q5SVQ8 909 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TREML2Q5T2D2 321 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CENPUQ71F23 418 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 VASH1Q7L8A9 365 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ERO1BQ86YB8 467 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 CNPY4Q8N129 248 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 ATXN2LQ8WWM7 1075 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 SPATA33Q96N06 139 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 SLITRK1Q96PX8 696 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 DDX23Q9BUQ8 820 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 INO80BQ9C086 356 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TMEM51Q9NW97 253 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 BTBD7Q9P203 1132 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 RGS17Q9UGC6 210 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 TPX2Q9ULW0 747 aaKnown RBP7.79□□□□□ -1.16
ZNF540-206ENST00000589117 FZD1Q9UP38 647 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 NEU2Q9Y3R4 380 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 SNCAIPQ9Y6H5 919 aa7.79□□□□□ -1.16
ZNF540-206ENST00000589117 IGKV6-21A0A0C4DH24 114 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 TMEM120BA0PK00 339 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 LRRD1A4D1F6 860 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 A6NHS1 94 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 SIGLEC16A6NMB1 481 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 RNF8O76064 485 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 ITGAVP06756 1048 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 KRT19P08727 400 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 BRAFP15056 766 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 CD19P15391 556 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 MARK3P27448 753 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 ATICP31939 592 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 STX2P32856 288 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 PHBP35232 272 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 PHKA2P46019 1235 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 ARSEP51690 589 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 RPL7AP62424 266 aaKnown RBP7.78□□□□□ -1.16
ZNF540-206ENST00000589117 IL9RQ01113 521 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 POU5F1BQ06416 359 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 TTLL4Q14679 1199 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 KCTD19Q17RG1 926 aaPredicted RBP7.78□□□□□ -1.16
ZNF540-206ENST00000589117 SEZ6Q53EL9 994 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 TJAP1Q5JTD0 557 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 PLA2G2CQ5R387 149 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 HIBCHQ6NVY1 386 aaPredicted RBP7.78□□□□□ -1.16
ZNF540-206ENST00000589117 SPOCD1Q6ZMY3 1216 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 FASTKD5Q7L8L6 764 aaKnown RBP7.78□□□□□ -1.16
ZNF540-206ENST00000589117 PIGWQ7Z7B1 504 aa7.78□□□□□ -1.16
ZNF540-206ENST00000589117 SUGP1Q8IWZ8 645 aaKnown RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms