RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SPATA6Q9NWH7 488 aaPredicted RBP13.2□□□□□ -0.3
SS18-225ENST00000585121 DLGAP2Q9P1A6 1054 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 NDRG2Q9UN36 371 aaKnown RBP13.2□□□□□ -0.3
SS18-225ENST00000585121 CETN3O15182 167 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 LAMTOR5O43504 91 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 TARSP26639 723 aaKnown RBP13.19□□□□□ -0.3
SS18-225ENST00000585121 PDE6CP51160 858 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 MLLT6P55198 1093 aaPredicted RBP13.19□□□□□ -0.3
SS18-225ENST00000585121 DLG4P78352 724 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 ENPEPQ07075 957 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 CCDC142Q17RM4 750 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 ZACNQ401N2 412 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 TXNDC8Q6A555 127 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 CC2D1AQ6P1N0 951 aaPredicted RBP13.19□□□□□ -0.3
SS18-225ENST00000585121 SCARA5Q6ZMJ2 495 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 DENND5BQ6ZUT9 1274 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 SV2AQ7L0J3 742 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 B3GALNT2Q8NCR0 500 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 STKLD1Q8NE28 680 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 FAM3CQ92520 227 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 RSPRY1Q96DX4 576 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 TIGD1Q96MW7 591 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 ELOVL4Q9GZR5 314 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 DNAI2Q9GZS0 605 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 TRPC7Q9HCX4 862 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 TDP1Q9NUW8 608 aa13.19□□□□□ -0.3
SS18-225ENST00000585121 MTF2Q9Y483 593 aaPredicted RBP13.19□□□□□ -0.3
SS18-225ENST00000585121 TRAV19A0A0A6YYK7 116 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 STX10O60499 249 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 LRRN2O75325 713 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 AKAP3O75969 853 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 VNN1O95497 513 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 PRAMEF12O95522 483 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 HLA-DRAP01903 254 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 USP17L7P0C7H9 530 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 EPB41P11171 864 aaKnown RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 NBL1P41271 181 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 RPS9P46781 194 aaKnown RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 STIM1Q13586 685 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 EDRF1Q3B7T1 1238 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 ZNF658Q5TYW1 1059 aaPredicted RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 ZC3H14Q6PJT7 736 aaKnown RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 TMEM150AQ86TG1 271 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 ENGASEQ8NFI3 743 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 CLDN23Q96B33 292 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 C8orf48Q96LL4 319 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 MED10Q9BTT4 135 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 SMYD3Q9H7B4 428 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 TRPM5Q9NZQ8 1165 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 ZFHX2Q9C0A1 2572 aaPredicted RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 F5P12259 2224 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 NCANO14594 1321 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 PROB1E7EW31 1015 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 F8VP50 259 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 KINO60870 393 aaKnown RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 GTF2H1P32780 548 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 RAP1GAPP47736 663 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 PPP3CCP48454 512 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 CDH8P55286 799 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 ZNF268Q14587 947 aaPredicted RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 FRMD5Q7Z6J6 570 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 SMYD4Q8IYR2 804 aaPredicted RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 NKD2Q969F2 451 aaPredicted RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 SMG9Q9H0W8 520 aaKnown RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 DPEP3Q9H4B8 488 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 MMRN2Q9H8L6 949 aa13.18□□□□□ -0.3
SS18-225ENST00000585121 CIZ1Q9ULV3 898 aaPredicted RBP13.18□□□□□ -0.3
SS18-225ENST00000585121 ARNTLO00327 626 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 GFRA3O60609 400 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 ASS1P00966 412 aaKnown RBP13.17□□□□□ -0.3
SS18-225ENST00000585121 CKMP06732 381 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 TRIM49P0CI25 452 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 TRIM49CP0CI26 452 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 CCNE1P24864 410 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 PRCPP42785 496 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 GCLMP48507 274 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 AMPD2Q01433 879 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 LRRC32Q14392 662 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 PPP2R5DQ14738 602 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 ITPRIPL2Q3MIP1 535 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 ZCWPW2Q504Y3 356 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 COBLL1Q53SF7 1204 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 UNC93AQ86WB7 457 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 RALGPS2Q86X27 583 aaPredicted RBP13.17□□□□□ -0.3
SS18-225ENST00000585121 USP13Q92995 863 aaPredicted RBP13.17□□□□□ -0.3
SS18-225ENST00000585121 ZFYVE19Q96K21 471 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 LRRC3BQ96PB8 259 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 IER2Q9BTL4 223 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 B3GNT5Q9BYG0 378 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 SEMA4AQ9H3S1 761 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 LMAN1LQ9HAT1 526 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 TMEM8AQ9HCN3 771 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 GKN1Q9NS71 199 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 FBXO4Q9UKT5 387 aa13.17□□□□□ -0.3
SS18-225ENST00000585121 SPECC1L-ADORA2AF8WAN1 911 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 RTN3O95197 1032 aaPredicted RBP13.16□□□□□ -0.3
SS18-225ENST00000585121 SP9P0CG40 484 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 PFKLP17858 780 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 HDCP19113 662 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 PPP1R2P41236 205 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms