RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 UPP2O95045 317 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 STAU1O95793 577 aaKnown RBP13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 LRPAP1P30533 357 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 PBX3P40426 434 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 RAB27AP51159 221 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 INCA1Q0VD86 236 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 PDCLQ13371 301 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 UPP1Q16831 310 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 PPP1R26Q5T8A7 1209 aaPredicted RBP13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 MCOLN2Q8IZK6 566 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 ZNF564Q8TBZ8 553 aaPredicted RBP13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 ALG3Q92685 438 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 PGBD4Q96DM1 585 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 VWCEQ96DN2 955 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 NT5C1AQ9BXI3 368 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 LRRC4CQ9HCJ2 640 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 DNAJB4Q9UDY4 337 aa13.4□□□□□ -0.26
CDK5RAP3-217ENST00000580287 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 DDX3YO15523 660 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 EN2P19622 333 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 COMTP21964 271 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GNL1P36915 607 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MARCKSL1P49006 195 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TIGD5Q53EQ6 642 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.39□□□□□ -0.271e-10■■■■■ 46
CDK5RAP3-217ENST00000580287 ZNF677Q86XU0 584 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 UBL4BQ8N7F7 174 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 APPL2Q8NEU8 664 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PIK3R5Q8WYR1 880 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 KRT35Q92764 455 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CALR3Q96L12 384 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SENP8Q96LD8 212 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ADAM22Q9P0K1 906 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CCDC188H7C350 402 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TTI1O43156 1089 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MICAL2O94851 1124 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CCDC130P13994 396 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RABGGTBP53611 331 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 YWHAEP62258 255 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 FAM189BP81408 668 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CENPCQ03188 943 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GLB1LQ6UWU2 654 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RASGEF1CQ8N431 466 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 C11orf49Q9H6J7 331 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 YY1AP1Q9H869 796 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SLC38A7Q9NVC3 462 aa13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PRG3Q9Y2Y8 225 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TRIM43BA6NCK2 446 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 O00370 1275 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 HUS1O60921 280 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TNFRSF8P28908 595 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 IRAK1P51617 712 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SV2CQ496J9 727 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 KIAA0319Q5VV43 1072 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CD300LGQ6UXG3 332 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MON1BQ7L1V2 547 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ADGRF2Q8IZF7 708 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CCDC26Q8TAB7 109 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TRIM43Q96BQ3 446 aaPredicted RBP13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ZNF560Q96MR9 790 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 DPH5Q9H2P9 285 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GDAP2Q9NXN4 497 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TSPAN16Q9UKR8 245 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TBX21Q9UL17 535 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GOLGA6L10A0A0M3HER8 536 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 M0QYV0 167 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ECHS1P30084 290 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CCT5P48643 541 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 BCAR1P56945 870 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GNGT1P63211 74 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PTP4A2Q12974 167 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 NNTQ13423 1086 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SCN5AQ14524 2016 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 FAM117BQ6P1L5 589 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 DSTYKQ6XUX3 929 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SEPT8Q92599 483 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CAVIN3Q969G5 261 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CPXM1Q96SM3 734 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CARD9Q9H257 536 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TBC1D13Q9NVG8 400 aa13.38□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CLDN5O00501 218 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 DAPK3O43293 454 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CPP00450 1065 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PAEPP09466 180 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ADORA2BP29275 332 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RGS7P49802 495 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RNASELQ05823 741 aaKnown RBP13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PKN2Q16513 984 aaKnown RBP13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PTPN20Q4JDL3 420 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SGO2Q562F6 1265 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 NOMO2Q5JPE7 1267 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CFAP58Q5T655 872 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 C11orf63Q6NUN7 778 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MAATS1Q7Z4T9 603 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TOX2Q96NM4 488 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TRIM51Q9BSJ1 452 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SNX25Q9H3E2 840 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 NT5C1B-RDH14C9J2C7 533 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ACRP10323 421 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms