RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 LNP1A1A4G5 178 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 C1QTNF9BB2RNN3 333 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 EIF5BO60841 1220 aaKnown RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 HUS1O60921 280 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 IL18RAPO95256 599 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 GCNT3O95395 438 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 APBB3O95704 486 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 CAVIN2O95810 425 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 C1QTNF9P0C862 333 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 HNRNPLP14866 589 aaKnown RBP eCLIP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 LMO2P25791 158 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 LONP1P36776 959 aaKnown RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 NOVA1P51513 510 aaKnown RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 USP46P62068 366 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 ZXDBP98169 803 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 MESP2Q0VG99 397 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 PDGFRLQ15198 375 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 RABEP1Q15276 862 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 NFE2Q16621 373 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 FAM173BQ6P4H8 233 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 SYT13Q7L8C5 426 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 SPATA2LQ8IUW3 424 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 ADGRF2Q8IZF7 708 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 TSTD1Q8NFU3 115 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 CXorf38Q8TB03 319 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 DDX1Q92499 740 aaKnown RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 MYLPFQ96A32 169 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 ZC3H10Q96K80 434 aaKnown RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 LSM14BQ9BX40 385 aaKnown RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 VPS45Q9NRW7 570 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 RBAKQ9NYW8 714 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 GCNT4Q9P109 453 aa12.95□□□□□ -0.34
CAPN3-220ENST00000569827 CIZ1Q9ULV3 898 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-220ENST00000569827 ATRXP46100 2492 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 PKD1L2Q7Z442 2459 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 VPS37CA5D8V6 355 aaPredicted RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 SLC26A4O43511 780 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 FOXD2O60548 495 aaPredicted RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 AKAP3O75969 853 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 PRPF6O94906 941 aaKnown RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 USP17L7P0C7H9 530 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 BDNFP23560 247 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 PAX3P23760 479 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 OPRD1P41143 372 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 RPL10AP62906 217 aaKnown RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 MYL7Q01449 175 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 CEBPZQ03701 1054 aaKnown RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 SMARCB1Q12824 385 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 FOXC1Q12948 553 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 ZNF268Q14587 947 aaPredicted RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 ELF2Q15723 593 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 GAB4Q2WGN9 574 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 L1TD1Q5T7N2 865 aaKnown RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 LARP1BQ659C4 914 aaKnown RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 ARMCX6Q7L4S7 300 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 CAMKK1Q8N5S9 505 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 FRMD1Q8N878 549 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 GLIS3Q8NEA6 775 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 OR5B17Q8NGF7 314 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 LEO1Q8WVC0 666 aaPredicted RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 HPS3Q969F9 1004 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 DNAJC19Q96DA6 116 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 ACBD6Q9BR61 282 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 STRA6Q9BX79 667 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 PANK2Q9BZ23 570 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 ST6GALNAC4Q9H4F1 302 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 CRTAC1Q9NQ79 661 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 SMPD4Q9NXE4 827 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 UXTQ9UBK9 157 aaPredicted RBP12.94□□□□□ -0.34
CAPN3-220ENST00000569827 NME7Q9Y5B8 376 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 PCDHGA5Q9Y5G8 931 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 DMXL2Q8TDJ6 3036 aa12.94□□□□□ -0.34
CAPN3-220ENST00000569827 ATXN2Q99700 1313 aaKnown RBP12.93□□□□□ -0.34
CAPN3-220ENST00000569827 A0A087X0B3 334 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 BCLAF3A2AJT9 711 aaKnown RBP12.93□□□□□ -0.34
CAPN3-220ENST00000569827 K7EQS6 105 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 PDGFRBP09619 1106 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 IDEP14735 1019 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 SCP2P22307 547 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 PNPLA4P41247 253 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 DHPSP49366 369 aaPredicted RBP12.93□□□□□ -0.34
CAPN3-220ENST00000569827 ZNF252P-AS1Q0IIN9 211 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 IFRD2Q12894 506 aaPredicted RBP12.93□□□□□ -0.34
CAPN3-220ENST00000569827 KCNB1Q14721 858 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 SOWAHAQ2M3V2 549 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 UAP1L1Q3KQV9 507 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 SYCP3Q8IZU3 236 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 MDGA1Q8NFP4 955 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 USP33Q8TEY7 942 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 KBTBD7Q8WVZ9 684 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 RLN3Q8WXF3 142 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 ATP2A3Q93084 1043 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 HVCN1Q96D96 273 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 ERLEC1Q96DZ1 483 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 TRMT2BQ96GJ1 504 aaKnown RBP12.93□□□□□ -0.34
CAPN3-220ENST00000569827 MYRFLQ96LU7 910 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 ACCSQ96QU6 501 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 SYT15Q9BQS2 421 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 TMEM206Q9H813 350 aa12.93□□□□□ -0.34
CAPN3-220ENST00000569827 ZMYM5Q9UJ78 669 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms