RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GIPC1O14908 333 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 KIAA0391O15091 583 aaKnown RBP14.87□□□□□ -0.03
CLN3-235ENST00000568497 PAPSS2O95340 614 aaPredicted RBP14.87□□□□□ -0.03
CLN3-235ENST00000568497 PDGFRBP09619 1106 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 ODC1P11926 461 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 CPB1P15086 417 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 CEBPBP17676 345 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 CCNE1P24864 410 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 LMO2P25791 158 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 GDI1P31150 447 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 GPR15P49685 360 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 VAMP7P51809 220 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 PSMC1P62191 440 aaKnown RBP14.87□□□□□ -0.03
CLN3-235ENST00000568497 RAB33AQ14088 237 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 GAS6Q14393 721 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 SLC5A9Q2M3M2 681 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 DPCR1Q3MIW9 517 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 DCAF17Q5H9S7 520 aaPredicted RBP14.87□□□□□ -0.03
CLN3-235ENST00000568497 SDHAF4Q5VUM1 108 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 ZNF280DQ6N043 979 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 TTI2Q6NXR4 508 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 ANKS3Q6ZW76 656 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 RTL10Q7L3V2 364 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 CYP4F11Q9HBI6 524 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 ZFP14Q9HCL3 533 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 TRPV5Q9NQA5 729 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 AVENQ9NQS1 362 aaPredicted RBP14.87□□□□□ -0.03
CLN3-235ENST00000568497 ITGA11Q9UKX5 1188 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 FRMD4BQ9Y2L6 1034 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 BACE2Q9Y5Z0 518 aa14.87□□□□□ -0.03
CLN3-235ENST00000568497 K7ESF4 209 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 ZIC2O95409 532 aaPredicted RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 HLA-DRAP01903 254 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 RHOP08100 348 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 CHRNB1P11230 501 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SNRPFP62306 86 aaKnown RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 DUSP4Q13115 394 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 LRRC32Q14392 662 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SOWAHAQ2M3V2 549 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SV2CQ496J9 727 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SLC39A12Q504Y0 691 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SV2AQ7L0J3 742 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 CREBRFQ8IUR6 639 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 ELOA2Q8IYF1 753 aaPredicted RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 HS6ST3Q8IZP7 471 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 APPL2Q8NEU8 664 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 TAS1R2Q8TE23 839 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SEMA4DQ92854 862 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 MMS19Q96T76 1030 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 TSG101Q99816 390 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 XYLT2Q9H1B5 865 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 ZNF334Q9HCZ1 680 aaPredicted RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 RBM12Q9NTZ6 932 aaKnown RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 CGNQ9P2M7 1197 aaKnown RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 SPAG17Q6Q759 2223 aa14.86□□□□□ -0.03
CLN3-235ENST00000568497 SETXQ7Z333 2677 aaKnown RBP14.86□□□□□ -0.03
CLN3-235ENST00000568497 CETN3O15182 167 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 EPN2O95208 641 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 CCDC192P0DO97 292 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 PSMC2P35998 433 aaKnown RBP14.85□□□□□ -0.03
CLN3-235ENST00000568497 POU5F1Q01860 360 aaKnown RBP14.85□□□□□ -0.03
CLN3-235ENST00000568497 TRPC3Q13507 836 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 NCOA4Q13772 614 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 SURF1Q15526 300 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 TCERG1LQ5VWI1 586 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 PDXDC1Q6P996 788 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 POTEHQ6S545 545 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 Q6ZS52 159 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 NT5DC4Q86YG4 428 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 GPIHBP1Q8IV16 184 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 ADGRF2Q8IZF7 708 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 KBTBD7Q8WVZ9 684 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 LOXL4Q96JB6 756 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 ZNF560Q96MR9 790 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 EDEM2Q9BV94 578 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 SCNM1Q9BWG6 230 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 TMEM121BQ9BXQ6 578 aaPredicted RBP14.85□□□□□ -0.03
CLN3-235ENST00000568497 DPEP3Q9H4B8 488 aa14.85□□□□□ -0.03
CLN3-235ENST00000568497 APOBEC3GQ9HC16 384 aaKnown RBP14.85□□□□□ -0.03
CLN3-235ENST00000568497 DDX43Q9NXZ2 648 aaKnown RBP14.85□□□□□ -0.03
CLN3-235ENST00000568497 COL4A2P08572 1712 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 H7C4K7 107 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 PRRG1O14668 218 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 PSMA7O14818 248 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 RPP40O75818 363 aaKnown RBP14.84□□□□□ -0.03
CLN3-235ENST00000568497 OAZ2O95190 189 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 KIF20AO95235 890 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 TOP3BO95985 862 aaKnown RBP14.84□□□□□ -0.03
CLN3-235ENST00000568497 EPB41P11171 864 aaKnown RBP14.84□□□□□ -0.03
CLN3-235ENST00000568497 GJA1P17302 382 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 PSMC3P17980 439 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 TYMPP19971 482 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 FCARP24071 287 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 MPLP40238 635 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 PIK3CAP42336 1068 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 PAK1Q13153 545 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 EDRF1Q3B7T1 1238 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 WDR72Q3MJ13 1102 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 CBWD6Q4V339 395 aa14.84□□□□□ -0.03
CLN3-235ENST00000568497 CBWD3Q5JTY5 395 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms