RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 CACNA2D1P54289 1103 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 CSTF1Q05048 431 aaKnown RBP10.15□□□□□ -0.78
SF3B3-211ENST00000568291 ZACNQ401N2 412 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 TTC16Q8NEE8 873 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 TTC8Q8TAM2 541 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 ZSCAN18Q8TBC5 510 aaPredicted RBP10.15□□□□□ -0.78
SF3B3-211ENST00000568291 TMC2Q8TDI7 906 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 SEMA4DQ92854 862 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 DNASE1L2Q92874 299 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 PSMG2Q969U7 264 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 CCDC34Q96HJ3 373 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 LRRC3BQ96PB8 259 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 DUSP9Q99956 384 aaKnown RBP10.15□□□□□ -0.78
SF3B3-211ENST00000568291 IL21Q9HBE4 155 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 APOBEC3GQ9HC16 384 aaKnown RBP10.15□□□□□ -0.78
SF3B3-211ENST00000568291 AVENQ9NQS1 362 aaPredicted RBP10.15□□□□□ -0.78
SF3B3-211ENST00000568291 HEBP1Q9NRV9 189 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 TMEM30AQ9NV96 361 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 MAFFQ9ULX9 164 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 SMG5Q9UPR3 1016 aaKnown RBP10.15□□□□□ -0.78
SF3B3-211ENST00000568291 CTNND2Q9UQB3 1225 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 PCDHGA2Q9Y5H1 932 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 DMXL1Q9Y485 3027 aa10.15□□□□□ -0.78
SF3B3-211ENST00000568291 SPAG17Q6Q759 2223 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ZNF638Q14966 1978 aaKnown RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 SLC38A8A6NNN8 435 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ZNF197O14709 1029 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 CETN3O15182 167 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 HMGA1P17096 107 aaKnown RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 PTPN1P18031 435 aaKnown RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 CD58P19256 250 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 PCSK1P29120 753 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 GRIK1P39086 918 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 EPHA5P54756 1037 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 USP46P62068 366 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 UBE2HP62256 183 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 MORC3Q14149 939 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 PUM1Q14671 1186 aaKnown RBP eCLIP10.14□□□□□ -0.799e-7■■■■■ 27.5
SF3B3-211ENST00000568291 VEPH1Q14D04 833 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 NFE2Q16621 373 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 SGSM1Q2NKQ1 1148 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 DCAF17Q5H9S7 520 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ZNF667Q5HYK9 610 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 GPR158Q5T848 1215 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 TCERG1LQ5VWI1 586 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 TXNDC8Q6A555 127 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 FAM171BQ6P995 826 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ZNF852Q6ZMS4 543 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 DPH6Q7L8W6 267 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 TMEM150AQ86TG1 271 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ACOT1Q86TX2 421 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 SPPL2BQ8TCT7 592 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 NELFBQ8WX92 580 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ATRIPQ8WXE1 791 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 TATDN2Q93075 761 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 SYAP1Q96A49 352 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 CLDN23Q96B33 292 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ELSPBP1Q96BH3 223 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 PCED1BQ96HM7 432 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ASB16Q96NS5 453 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 MKNK1Q9BUB5 465 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 SLC46A2Q9BY10 475 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 B3GNT5Q9BYG0 378 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ZNF518BQ9C0D4 1074 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 PRMT8Q9NR22 394 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 ZSCAN32Q9NX65 697 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 MAGEC2Q9UBF1 373 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 HOOK1Q9UJC3 728 aaKnown RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 CDH9Q9ULB4 789 aa10.14□□□□□ -0.79
SF3B3-211ENST00000568291 MRPS17Q9Y2R5 130 aaKnown RBP10.14□□□□□ -0.79
SF3B3-211ENST00000568291 DENND4CQ5VZ89 1909 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 WDR87Q6ZQQ6 2873 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 IKBKBO14920 756 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 NCAM2O15394 837 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 TACC1O75410 805 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 PRAMEF12O95522 483 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 EPB41P11171 864 aaKnown RBP10.13□□□□□ -0.79
SF3B3-211ENST00000568291 CCNE1P24864 410 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 ATICP31939 592 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 ASPAP45381 313 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 RPS9P46781 194 aaKnown RBP10.13□□□□□ -0.79
SF3B3-211ENST00000568291 NDST1P52848 882 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 IFRD2Q12894 506 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-211ENST00000568291 LRMPQ12912 555 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 NFIL3Q16649 462 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 EDRF1Q3B7T1 1238 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 CBWD6Q4V339 395 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 CBWD3Q5JTY5 395 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 CBWD5Q5RIA9 395 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 VITQ6UXI7 678 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 INTS8Q75QN2 995 aaKnown RBP10.13□□□□□ -0.79
SF3B3-211ENST00000568291 ARID3BQ8IVW6 561 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-211ENST00000568291 MAB21L3Q8N8X9 362 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 C12orf29Q8N999 325 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 MYCBPAPQ8TBZ2 947 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 TMEM174Q8WUU8 243 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 SMARCD2Q92925 531 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 ZFYVE19Q96K21 471 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 TWNKQ96RR1 684 aa10.13□□□□□ -0.79
SF3B3-211ENST00000568291 CYP2S1Q96SQ9 504 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms