RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 RTP2Q5QGT7 225 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 PLEKHA7Q6IQ23 1121 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 TAS1R1Q7RTX1 841 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 HERC6Q8IVU3 1022 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 SLC39A11Q8N1S5 342 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 CALR3Q96L12 384 aaKnown RBP32.29■■■□□ 2.76
CTCF-203ENST00000566078 NAPGQ99747 312 aaPredicted RBP32.29■■■□□ 2.76
CTCF-203ENST00000566078 TTPALQ9BTX7 342 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 TMLHEQ9NVH6 421 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 CTAGE9A4FU28 777 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 EFEMP2O95967 443 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 FAM200BP0CF97 657 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 NPR3P17342 541 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 GABRB2P47870 512 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 SLC8A3P57103 927 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 MRPL58Q14197 206 aaKnown RBP32.28■■■□□ 2.76
CTCF-203ENST00000566078 MAPRE1Q15691 268 aaKnown RBP32.28■■■□□ 2.76
CTCF-203ENST00000566078 DNAJC24Q6P3W2 148 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 LRRTM3Q86VH5 581 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 VN1R3Q9BXE9 311 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 MRPL47Q9HD33 250 aaKnown RBP32.28■■■□□ 2.76
CTCF-203ENST00000566078 PARVAQ9NVD7 372 aa32.28■■■□□ 2.76
CTCF-203ENST00000566078 E5RJQ4 531 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 PIK3R2O00459 728 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 OR4Q2P0C623 313 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 MAMLD1Q13495 774 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 DAAM2Q86T65 1068 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 XYLT1Q86Y38 959 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 FIBCD1Q8N539 461 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 LRRC57Q8N9N7 239 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 STK32AQ8WU08 396 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 TMEM169Q96HH4 297 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 ZCWPW1Q9H0M4 648 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 INSL6Q9Y581 213 aa32.27■■■□□ 2.76
CTCF-203ENST00000566078 CARNS1A5YM72 827 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 XPO1O14980 1071 aaKnown RBP32.26■■■□□ 2.76
CTCF-203ENST00000566078 BUB1BO60566 1050 aaPredicted RBP32.26■■■□□ 2.76
CTCF-203ENST00000566078 AP1G2O75843 785 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 ATP2A2P16615 1042 aaKnown RBP32.26■■■□□ 2.76
CTCF-203ENST00000566078 CLEC20AQ6ZU45 233 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 C3orf20Q8ND61 904 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 PHOSPHO2Q8TCD6 241 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 SMARCD1Q96GM5 515 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 SLC4A5Q9BY07 1137 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 MIS12Q9H081 205 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 GOLPH3Q9H4A6 298 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 WDR35Q9P2L0 1181 aa32.26■■■□□ 2.76
CTCF-203ENST00000566078 GOLGA8SH3BPF8 625 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 ENC1O14682 589 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 GJB6O95452 261 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 PLA2G4AP47712 749 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 GSCP56915 257 aaPredicted RBP32.26■■■□□ 2.75
CTCF-203ENST00000566078 USP41Q3LFD5 358 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 SLC39A12Q504Y0 691 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 RNF168Q8IYW5 571 aaPredicted RBP32.26■■■□□ 2.75
CTCF-203ENST00000566078 DCP1BQ8IZD4 617 aaKnown RBP32.26■■■□□ 2.75
CTCF-203ENST00000566078 RHOBTB2Q9BYZ6 727 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 SPG21Q9NZD8 308 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 ANAPC7Q9UJX3 599 aa32.26■■■□□ 2.75
CTCF-203ENST00000566078 MYO16Q9Y6X6 1858 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 TCRBV5S1A1TA0A578 114 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 OR6C75A6NL08 312 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 H7C4K7 107 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 BEST1O76090 585 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 FTCDO95954 541 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 SYCE1Q8N0S2 351 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 BTBD6Q96KE9 485 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 AAASQ9NRG9 546 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 JRKLQ9Y4A0 524 aa32.25■■■□□ 2.75
CTCF-203ENST00000566078 ATP1A1P05023 1023 aaKnown RBP32.24■■■□□ 2.75
CTCF-203ENST00000566078 MAP3K7CLP57077 242 aa32.24■■■□□ 2.75
CTCF-203ENST00000566078 ZNF268Q14587 947 aaPredicted RBP32.24■■■□□ 2.75
CTCF-203ENST00000566078 C4orf50Q6ZRC1 276 aa32.24■■■□□ 2.75
CTCF-203ENST00000566078 ANKS3Q6ZW76 656 aa32.24■■■□□ 2.75
CTCF-203ENST00000566078 RAD9AQ99638 391 aa32.24■■■□□ 2.75
CTCF-203ENST00000566078 SELENOOQ9BVL4 669 aa32.24■■■□□ 2.75
CTCF-203ENST00000566078 TMEM110-MUSTN1A8MSY1 372 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 SNX16P57768 344 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 MESDQ14696 234 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 C11orf63Q6NUN7 778 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 FAM183BPQ6ZVS7 135 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 SLFN11Q7Z7L1 901 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 TMEM110Q86TL2 294 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 SPATA2LQ8IUW3 424 aaPredicted RBP32.23■■■□□ 2.75
CTCF-203ENST00000566078 SMOQ99835 787 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 CYLDQ9NQC7 956 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 NR2E3Q9Y5X4 410 aa32.23■■■□□ 2.75
CTCF-203ENST00000566078 TLL1O43897 1013 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 CAPN15O75808 1086 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 BDNFP23560 247 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 PPM1AP35813 382 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 CACNA2D1P54289 1103 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 PTPROQ16827 1216 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 OR6B2Q6IFH4 312 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 PRSS55Q6UWB4 352 aaPredicted RBP32.22■■■□□ 2.75
CTCF-203ENST00000566078 PIGZQ86VD9 579 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 FEZF2Q8TBJ5 459 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 MCRS1Q96EZ8 462 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 HSFY1Q96LI6 401 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 MCEEQ96PE7 176 aa32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms