RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 PPP3CAQ08209 521 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 ANGPT1Q15389 498 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 SGSM1Q2NKQ1 1148 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 VSTM1Q6UX27 236 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 SCARA5Q6ZMJ2 495 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 YAF2Q8IY57 180 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 FAM186BQ8IYM0 893 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 CMTM8Q8IZV2 173 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 ZFYVE19Q96K21 471 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 TIGD1Q96MW7 591 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 GSDMAQ96QA5 445 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 LTB4R2Q9NPC1 389 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 TMEM30AQ9NV96 361 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 RMND1Q9NWS8 449 aa19.61■□□□□ 0.73
CLN3-221ENST00000566057 HELZP42694 1942 aaKnown RBP19.61■□□□□ 0.73
CLN3-221ENST00000566057 CLDN5O00501 218 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 DPYSL4O14531 572 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 CHADO15335 359 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 CLSTN1O94985 981 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 HLA-DRAP01903 254 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 GCLMP48507 274 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 CACNA2D1P54289 1103 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 FZD5Q13467 585 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 ZNF658Q5TYW1 1059 aaPredicted RBP19.6■□□□□ 0.73
CLN3-221ENST00000566057 SPOPLQ6IQ16 392 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 ZNF852Q6ZMS4 543 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 INTS8Q75QN2 995 aaKnown RBP19.6■□□□□ 0.73
CLN3-221ENST00000566057 MON1AQ86VX9 555 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 B3GALNT2Q8NCR0 500 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 SPATA17Q96L03 361 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 B3GNT5Q9BYG0 378 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.6■□□□□ 0.736e-9■■■■■ 134.6
CLN3-221ENST00000566057 OBP2AQ9NY56 170 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 UXTQ9UBK9 157 aaPredicted RBP19.6■□□□□ 0.73
CLN3-221ENST00000566057 CCL26Q9Y258 94 aa19.6■□□□□ 0.73
CLN3-221ENST00000566057 FANCMQ8IYD8 2048 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 SMC2O95347 1197 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 ASS1P00966 412 aaKnown RBP19.59■□□□□ 0.73
CLN3-221ENST00000566057 DDX6P26196 483 aaKnown RBP eCLIP19.59■□□□□ 0.73
CLN3-221ENST00000566057 MCCD1P59942 119 aaPredicted RBP19.59■□□□□ 0.73
CLN3-221ENST00000566057 USP46P62068 366 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 EDRF1Q3B7T1 1238 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 ZNF687Q8N1G0 1237 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 MRPS31Q92665 395 aaKnown RBP19.59■□□□□ 0.73
CLN3-221ENST00000566057 USP13Q92995 863 aaPredicted RBP19.59■□□□□ 0.73
CLN3-221ENST00000566057 SMARCE1Q969G3 411 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 OSBPL6Q9BZF3 934 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 ZNF518BQ9C0D4 1074 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 PIAS3Q9Y6X2 628 aa19.59■□□□□ 0.73
CLN3-221ENST00000566057 F8VP50 259 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 KRT13P13646 458 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 PIK3CAP42336 1068 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 PMS1P54277 932 aaKnown RBP19.58■□□□□ 0.72
CLN3-221ENST00000566057 ARHGAP29Q52LW3 1261 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 COBLL1Q53SF7 1204 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 ANKRD40Q6AI12 368 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 ISM2Q6H9L7 571 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 CELF5Q8N6W0 485 aaKnown RBP19.58■□□□□ 0.72
CLN3-221ENST00000566057 TTC8Q8TAM2 541 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 RIN3Q8TB24 985 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 BPIFB1Q8TDL5 484 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 TAS1R2Q8TE23 839 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 TAF4BQ92750 862 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 CLDN23Q96B33 292 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 SLC22A12Q96S37 553 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 CYP2S1Q96SQ9 504 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 NELL2Q99435 816 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 MMRN2Q9H8L6 949 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 ZMYM5Q9UJ78 669 aa19.58■□□□□ 0.72
CLN3-221ENST00000566057 CIZ1Q9ULV3 898 aaPredicted RBP19.58■□□□□ 0.72
CLN3-221ENST00000566057 SOBPA7XYQ1 873 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 AVPR1AP37288 418 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 ASPAP45381 313 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 SOX9P48436 509 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 ENPEPQ07075 957 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 TNK2Q07912 1038 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 ORC1Q13415 861 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 DENND5BQ6ZUT9 1274 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 PAQR9Q6ZVX9 377 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 ACOT1Q86TX2 421 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 C1orf210Q8IVY1 113 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 C8orf48Q96LL4 319 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 BCO2Q9BYV7 579 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 APOBEC3GQ9HC16 384 aaKnown RBP19.57■□□□□ 0.72
CLN3-221ENST00000566057 TDP1Q9NUW8 608 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 GTSE1Q9NYZ3 720 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 HMGXB4Q9UGU5 601 aa19.57■□□□□ 0.72
CLN3-221ENST00000566057 NDRG2Q9UN36 371 aaKnown RBP19.57■□□□□ 0.72
CLN3-221ENST00000566057 ATG2BQ96BY7 2078 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 C2orf78A6NCI8 922 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 MAN2B1O00754 1011 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 TRIM66O15016 1216 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 CETN3O15182 167 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 P4HA1P13674 534 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 ANXA13P27216 316 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 ELOA2Q8IYF1 753 aaPredicted RBP19.56■□□□□ 0.72
CLN3-221ENST00000566057 MAML2Q8IZL2 1156 aaPredicted RBP19.56■□□□□ 0.72
CLN3-221ENST00000566057 ADSSL1Q8N142 457 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 CSGALNACT1Q8TDX6 532 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 FAM3CQ92520 227 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms