RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCDC65Q8IXS2 484 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 RPLP0P6Q8NHW5 317 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 SPATA18Q8TC71 538 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 SH3RF2Q8TEC5 729 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 KBTBD7Q8WVZ9 684 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 MYLPFQ96A32 169 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 FUBP3Q96I24 572 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-211ENST00000564091 SYT15Q9BQS2 421 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 LINC00597Q9H2U6 94 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 SMOC1Q9H4F8 434 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 CRTAC1Q9NQ79 661 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 FOXD4L1Q9NU39 408 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 MAGEC2Q9UBF1 373 aaPredicted RBP18.06■□□□□ 0.48
CLN3-211ENST00000564091 MTMR6Q9Y217 621 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 CHD8Q9HCK8 2581 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 ZNF233A6NK53 670 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 FOXD2O60548 495 aaPredicted RBP18.05■□□□□ 0.48
CLN3-211ENST00000564091 KRT37O76014 449 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 EPN2O95208 641 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 HDCP19113 662 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 BDNFP23560 247 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 HOXD13P35453 343 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 USP4Q13107 963 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 PSMD2Q13200 908 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 DUOXA2Q1HG44 320 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 EML3Q32P44 896 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 C4orf50Q6ZRC1 276 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 DPH6Q7L8W6 267 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 LIMS2Q7Z4I7 341 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 CAMKK1Q8N5S9 505 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 C12orf50Q8NA57 414 aaPredicted RBP18.05■□□□□ 0.48
CLN3-211ENST00000564091 CD101Q93033 1021 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 LOXL4Q96JB6 756 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 TSC2P49815 1807 aa18.05■□□□□ 0.48
CLN3-211ENST00000564091 DCLK1O15075 740 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 TNNC2P02585 160 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 CENPBP07199 599 aaPredicted RBP18.04■□□□□ 0.48
CLN3-211ENST00000564091 ZNF806P0C7X5 589 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 GRIK1P39086 918 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 MAGEA11P43364 429 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 USP46P62068 366 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 KCNB1Q14721 858 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 FBXO43Q4G163 708 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 IL31Q6EBC2 164 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 FSIP1Q8NA03 581 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 ATP2A3Q93084 1043 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 MMS19Q96T76 1030 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 HSPBP1Q9NZL4 362 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 CDH9Q9ULB4 789 aa18.04■□□□□ 0.48
CLN3-211ENST00000564091 MORC2Q9Y6X9 1032 aaPredicted RBP18.04■□□□□ 0.48
CLN3-211ENST00000564091 CNOT1A5YKK6 2376 aaKnown RBP18.03■□□□□ 0.48
CLN3-211ENST00000564091 ANTXRLA6NF34 631 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 KIAA0391O15091 583 aaKnown RBP18.03■□□□□ 0.48
CLN3-211ENST00000564091 ZXDBP98169 803 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 CYP27A1Q02318 531 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 DMC1Q14565 340 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 PLK5Q496M5 336 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 SYT13Q7L8C5 426 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 RDH13Q8NBN7 331 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 EXOC4Q96A65 974 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 SPATA17Q96L03 361 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 MRPL45Q9BRJ2 306 aaKnown RBP18.03■□□□□ 0.48
CLN3-211ENST00000564091 ARHGAP26Q9UNA1 814 aa18.03■□□□□ 0.48
CLN3-211ENST00000564091 AKAP3O75969 853 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 CST3P01034 146 aaPredicted RBP18.02■□□□□ 0.48
CLN3-211ENST00000564091 DLATP10515 647 aaKnown RBP18.02■□□□□ 0.48
CLN3-211ENST00000564091 WARSP23381 471 aaKnown RBP18.02■□□□□ 0.48
CLN3-211ENST00000564091 NR1H3Q13133 447 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 STK38Q15208 465 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 SURF1Q15526 300 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 PLA2G2CQ5R387 149 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 VSTM1Q6UX27 236 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 DENND5BQ6ZUT9 1274 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 STXBP4Q6ZWJ1 553 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 TRAPPC11Q7Z392 1133 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 PCED1BQ96HM7 432 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 ZC3H10Q96K80 434 aaKnown RBP18.02■□□□□ 0.48
CLN3-211ENST00000564091 DUSP15Q9H1R2 295 aaPredicted RBP18.02■□□□□ 0.48
CLN3-211ENST00000564091 TNMDQ9H2S6 317 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 NME7Q9Y5B8 376 aa18.02■□□□□ 0.48
CLN3-211ENST00000564091 LEFTY2O00292 366 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 TM4SF5O14894 197 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 APBB3O95704 486 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 MPLP40238 635 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 NASPP49321 788 aaPredicted RBP18.01■□□□□ 0.47
CLN3-211ENST00000564091 LIMK1P53667 647 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 E2F4Q16254 413 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 MDH1BQ5I0G3 518 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 STPG1Q5TH74 334 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 TCEAL6Q6IPX3 200 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 WDR49Q8IV35 697 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 LINC00301Q8NCQ3 95 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 MYCBPAPQ8TBZ2 947 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 TCEAL3Q969E4 200 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 DHX58Q96C10 678 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 TRIM9Q9C026 710 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 ZSCAN16Q9H4T2 348 aaPredicted RBP18.01■□□□□ 0.47
CLN3-211ENST00000564091 KBTBD4Q9NVX7 518 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 TRPM5Q9NZQ8 1165 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 TFIP11Q9UBB9 837 aaKnown RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms