RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 RAB20Q9NX57 234 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 OBP2AQ9NY56 170 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 CTNND2Q9UQB3 1225 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 STK25O00506 426 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 F11P03951 625 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 HMGA1P17096 107 aaKnown RBP14.25□□□□□ -0.13
CLK3-213ENST00000563842 PSMC3P17980 439 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 ASPAP45381 313 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 RAP1GAPP47736 663 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 GPR15P49685 360 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 MRE11P49959 708 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 CLCN5P51795 746 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 NUBP1P53384 320 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 NLRP12P59046 1061 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 CETN1Q12798 172 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 SPOPLQ6IQ16 392 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 MFSD6LQ8IWD5 586 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 YAF2Q8IY57 180 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 CRYBG2Q8N1P7 616 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 ST13P5Q8NFI4 369 aaPredicted RBP14.25□□□□□ -0.13
CLK3-213ENST00000563842 IRF7Q92985 503 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 C8orf48Q96LL4 319 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 ZSWIM3Q96MP5 696 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 MED10Q9BTT4 135 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 DPEP3Q9H4B8 488 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 CLSTN2Q9H4D0 955 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 BRD9Q9H8M2 597 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 IL21Q9HBE4 155 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 TICRRQ7Z2Z1 1910 aa14.25□□□□□ -0.13
CLK3-213ENST00000563842 HELZP42694 1942 aaKnown RBP14.24□□□□□ -0.13
CLK3-213ENST00000563842 CCDC192P0DO97 292 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 FCARP24071 287 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 AVPR2P30518 371 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 AVPR1AP37288 418 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 PPP3CCP48454 512 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 PDE6CP51160 858 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 NDST1P52848 882 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 CYP4F8P98187 520 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 PRKCQQ04759 706 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 INCA1Q0VD86 236 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 CCDC142Q17RM4 750 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 SDHAF4Q5VUM1 108 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 ASTLQ6HA08 431 aaPredicted RBP14.24□□□□□ -0.13
CLK3-213ENST00000563842 PHLDB3Q6NSJ2 640 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 DENND5BQ6ZUT9 1274 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 ACOT1Q86TX2 421 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 ARID3BQ8IVW6 561 aaPredicted RBP14.24□□□□□ -0.13
CLK3-213ENST00000563842 MLKLQ8NB16 471 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 FLCNQ8NFG4 579 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 DNASE1L2Q92874 299 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 SLC35C1Q96A29 364 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 SMARCD1Q96GM5 515 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 DUSP9Q99956 384 aaKnown RBP14.24□□□□□ -0.13
CLK3-213ENST00000563842 NT5C1AQ9BXI3 368 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 B3GNT5Q9BYG0 378 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 PLA2G2FQ9BZM2 168 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 SDCBP2Q9H190 292 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 NUP62CLQ9H1M0 184 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 ARHGEF3Q9NR81 526 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 RWDD2AQ9UIY3 292 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 CA14Q9ULX7 337 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 COQ4Q9Y3A0 265 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 NME7Q9Y5B8 376 aa14.24□□□□□ -0.13
CLK3-213ENST00000563842 F5P12259 2224 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 HEPACAM2A8MVW5 462 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 F8VP50 259 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 NRG2O14511 850 aaPredicted RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 ZNF263O14978 683 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 PMM2O15305 246 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 P4HA2O15460 535 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 RTN3O95197 1032 aaPredicted RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 PDGFBP01127 241 aaPredicted RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 PFKLP17858 780 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 VIPR2P41587 438 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 STX17P56962 302 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 YWHAEP62258 255 aaKnown RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 SLC44A4Q53GD3 710 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 STXBP5Q5T5C0 1151 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 POTEHQ6S545 545 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 VITQ6UXI7 678 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 MON1AQ86VX9 555 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 CMTM8Q8IZV2 173 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 CELF5Q8N6W0 485 aaKnown RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 ELMO3Q96BJ8 720 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 KIF9Q9HAQ2 790 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 APOBEC3GQ9HC16 384 aaKnown RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 DMAP1Q9NPF5 467 aaPredicted RBP14.23□□□□□ -0.13
CLK3-213ENST00000563842 TRPV5Q9NQA5 729 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.23□□□□□ -0.133e-11■■■■■ 183.3
CLK3-213ENST00000563842 LMBRD1Q9NUN5 540 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 TRPM5Q9NZQ8 1165 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 DACH1Q9UI36 760 aa14.23□□□□□ -0.13
CLK3-213ENST00000563842 KRBA1A5PL33 1030 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 CHADO15335 359 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 AOC1P19801 751 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 GDI1P31150 447 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 FMO5P49326 533 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 MARSP56192 900 aaKnown RBP14.22□□□□□ -0.13
CLK3-213ENST00000563842 STARD6P59095 220 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 FOXK2Q01167 660 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms