RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KIAA1257Q9ULG3 409 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 GVINP1Q7Z2Y8 2422 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 NRAPQ86VF7 1730 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 KAT6AQ92794 2004 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 E5RJQ4 531 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ATP9BO43861 1147 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 CST8O60676 142 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 XYLBO75191 536 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 CRCPO75575 148 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 PPM1AP35813 382 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 KCNJ1P48048 391 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 BST2Q10589 180 aaKnown RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 SLC10A6Q3KNW5 377 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 DCLRE1AQ6PJP8 1040 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 PRSS55Q6UWB4 352 aaPredicted RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 TMC5Q6UXY8 1006 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 CARNMT1Q8N4J0 409 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 DIS3LQ8TF46 1054 aaKnown RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 MS4A14Q96JA4 679 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 GAS2L1Q99501 681 aaPredicted RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 MCOLN1Q9GZU1 580 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ALG13Q9NP73 1137 aaKnown RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 TJP1Q07157 1748 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 DNM1LO00429 736 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 MYBL1P10243 752 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 CTNNA1P35221 906 aaKnown RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 SLCO1A2P46721 670 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ZBTB16Q05516 673 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 TUBB2AQ13885 445 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ACAD10Q6JQN1 1059 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 PIGZQ86VD9 579 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ANKRD42Q8N9B4 389 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 SMARCD1Q96GM5 515 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 TUBB2BQ9BVA1 445 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 TBK1Q9UHD2 729 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ADGRA3Q8IWK6 1321 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 OPA1O60313 960 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ATP4AP20648 1035 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 IFNAR2P48551 515 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 RABGGTBP53611 331 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 DR1Q01658 176 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 PPP2R5EQ16537 467 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 MAMDC4Q6UXC1 1216 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ANKS3Q6ZW76 656 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 RAPH1Q70E73 1250 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 B4GALNT4Q76KP1 1039 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 B3GALNT2Q8NCR0 500 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 CCDC110Q8TBZ0 833 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ALKBH8Q96BT7 664 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 PBKQ96KB5 322 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 DDX50Q9BQ39 737 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 KCTD10Q9H3F6 313 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 SARS2Q9NP81 518 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 ADAMTS5Q9UNA0 930 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 C2CD2Q9Y426 696 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ABCA3Q99758 1704 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 KNTC1P50748 2209 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 PER2O15055 1255 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 EPHB6O15197 1021 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ZNF185O15231 689 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 MICAL2O94851 1124 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 CYBAP13498 195 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 KRT10P13645 584 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 SESN2P58004 480 aaPredicted RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 EIF3EP60228 445 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 YWHAZP63104 245 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 MORN1Q5T089 497 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ITIH5Q86UX2 942 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 NPAS4Q8IUM7 802 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 PDIK1LQ8N165 341 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 MBOAT7Q96N66 472 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ADAM33Q9BZ11 813 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 NKIRAS1Q9NYS0 192 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ARHGAP20Q9P2F6 1191 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 FBXL21Q9UKT6 434 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 DUOX1Q9NRD9 1551 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 A0A1B0GUA9 196 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 CCDC66A2RUB6 948 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 GLUD1P00367 558 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ATP1A1P05023 1023 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 CYP2F1P24903 491 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ZNF177Q13360 481 aaPredicted RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 TARBP2Q15633 366 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 CCDC157Q569K6 752 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 LGSNQ5TDP6 509 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 DEFB106AQ8N104 65 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 C1orf127Q8N9H9 656 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 CFAP36Q96G28 342 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 WDR24Q96S15 920 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 MRPL45Q9BRJ2 306 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 ELOVL4Q9GZR5 314 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 TLR8Q9NR97 1041 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 UVRAGQ9P2Y5 699 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 ADAM28Q9UKQ2 775 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 Q9Y3F1 56 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 KCNN4O15554 427 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 SOAT2O75908 522 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 KIAA0754O94854 1291 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 IVLP07476 585 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms