RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 GCLMP48507 274 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 PPP3CAQ08209 521 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 EDRF1Q3B7T1 1238 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 VSTM1Q6UX27 236 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 CMTM8Q8IZV2 173 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 B3GALNT2Q8NCR0 500 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 CSGALNACT1Q8TDX6 532 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 LRRC3BQ96PB8 259 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 LTB4R2Q9NPC1 389 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 WDFY4Q6ZS81 3184 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 CACNA1IQ9P0X4 2223 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 CLDN5O00501 218 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 CETN3O15182 167 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 KINO60870 393 aaKnown RBP16.69■□□□□ 0.26
VPS39-203ENST00000561797 P4HA1P13674 534 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 GLULP15104 373 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 AVPR1AP37288 418 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 ANGPT1Q15389 498 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 ZNF852Q6ZMS4 543 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 SPATA20Q8TB22 786 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 BPIFB1Q8TDL5 484 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 TRMT2BQ96GJ1 504 aaKnown RBP16.69■□□□□ 0.26
VPS39-203ENST00000561797 ZFYVE19Q96K21 471 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 MYRFLQ96LU7 910 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 TSG101Q99816 390 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 B3GNT5Q9BYG0 378 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 DLGAP2Q9P1A6 1054 aa16.69■□□□□ 0.26
VPS39-203ENST00000561797 NDRG2Q9UN36 371 aaKnown RBP16.69■□□□□ 0.26
VPS39-203ENST00000561797 F8VP50 259 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 TRIM66O15016 1216 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 CHADO15335 359 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 TADA3O75528 432 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 ASS1P00966 412 aaKnown RBP16.68■□□□□ 0.26
VPS39-203ENST00000561797 DDX6P26196 483 aaKnown RBP eCLIP16.68■□□□□ 0.26
VPS39-203ENST00000561797 WEE1P30291 646 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 HOXD11P31277 338 aaPredicted RBP16.68■□□□□ 0.26
VPS39-203ENST00000561797 MRE11P49959 708 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 FCHO2Q0JRZ9 810 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 ORC1Q13415 861 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 ANKRD40Q6AI12 368 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 ACOT1Q86TX2 421 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 MON1AQ86VX9 555 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 CELF5Q8N6W0 485 aaKnown RBP16.68■□□□□ 0.26
VPS39-203ENST00000561797 TTC8Q8TAM2 541 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 TAS1R2Q8TE23 839 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 TAF4BQ92750 862 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 SPATA17Q96L03 361 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 MED10Q9BTT4 135 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 ZNF518BQ9C0D4 1074 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 TRPC7Q9HCX4 862 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 TRPV5Q9NQA5 729 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 OBP2AQ9NY56 170 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 ZMYM5Q9UJ78 669 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 PIAS3Q9Y6X2 628 aa16.68■□□□□ 0.26
VPS39-203ENST00000561797 FANCMQ8IYD8 2048 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 TRIM49BA6NDI0 452 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 SHISA7A6NL88 538 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 EPB41P11171 864 aaKnown RBP16.67■□□□□ 0.26
VPS39-203ENST00000561797 TARSP26639 723 aaKnown RBP16.67■□□□□ 0.26
VPS39-203ENST00000561797 KPNA1P52294 538 aaPredicted RBP16.67■□□□□ 0.26
VPS39-203ENST00000561797 PMS1P54277 932 aaKnown RBP16.67■□□□□ 0.26
VPS39-203ENST00000561797 CACNA2D1P54289 1103 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 USP46P62068 366 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 ARHGAP29Q52LW3 1261 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 COBLL1Q53SF7 1204 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 DENND5BQ6ZUT9 1274 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 ADSSL1Q8N142 457 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 TTC16Q8NEE8 873 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 FAM3CQ92520 227 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 USP13Q92995 863 aaPredicted RBP16.67■□□□□ 0.26
VPS39-203ENST00000561797 TNIP3Q96KP6 325 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 C8orf48Q96LL4 319 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 CYP2S1Q96SQ9 504 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 NELL2Q99435 816 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 BCO2Q9BYV7 579 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 OSBPL6Q9BZF3 934 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 IMPG2Q9BZV3 1241 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 ELOVL4Q9GZR5 314 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 TDP1Q9NUW8 608 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 TMEM30AQ9NV96 361 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 MAN1B1Q9UKM7 699 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 CCL26Q9Y258 94 aa16.67■□□□□ 0.26
VPS39-203ENST00000561797 MRPS17Q9Y2R5 130 aaKnown RBP16.67■□□□□ 0.26
VPS39-203ENST00000561797 ATG2BQ96BY7 2078 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 ARNTLO00327 626 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 MAN2B1O00754 1011 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 ASPAP45381 313 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 SOX9P48436 509 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 NDST1P52848 882 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 NOP14P78316 857 aaKnown RBP16.66■□□□□ 0.26
VPS39-203ENST00000561797 ENPEPQ07075 957 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 IFRD2Q12894 506 aaPredicted RBP16.66■□□□□ 0.26
VPS39-203ENST00000561797 ELOA2Q8IYF1 753 aaPredicted RBP16.66■□□□□ 0.26
VPS39-203ENST00000561797 SLC22A12Q96S37 553 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 GTPBP4Q9BZE4 634 aaKnown RBP16.66■□□□□ 0.26
VPS39-203ENST00000561797 APOBEC3GQ9HC16 384 aaKnown RBP16.66■□□□□ 0.26
VPS39-203ENST00000561797 TMEM8AQ9HCN3 771 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 GKN1Q9NS71 199 aa16.66■□□□□ 0.26
VPS39-203ENST00000561797 THG1LQ9NWX6 298 aaKnown RBP16.66■□□□□ 0.26
VPS39-203ENST00000561797 GTSE1Q9NYZ3 720 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms