RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 VN1R3Q9BXE9 311 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 DUSP16Q9BY84 665 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 GPR62Q9BZJ7 368 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 DNAI2Q9GZS0 605 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 TMEM30AQ9NV96 361 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 PARVAQ9NVD7 372 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 TMLHEQ9NVH6 421 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 WDR35Q9P2L0 1181 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 HESX1Q9UBX0 185 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 STRIP2Q9ULQ0 834 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 FAN1Q9Y2M0 1017 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 ALG6Q9Y672 507 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 SCINQ9Y6U3 715 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 SIGLEC16A6NMB1 481 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 E5RJQ4 531 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 CLDN5O00501 218 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 XPO1O14980 1071 aaKnown RBP11.92□□□□□ -0.5
SNX1-212ENST00000560861 TBC1D4O60343 1298 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 PROSCO94903 275 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 ALDH2P05091 517 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 LINC00271P0C7V0 271 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 NPR3P17342 541 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 MAN1A1P33908 653 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 BCAR1P56945 870 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 RPL7AP62424 266 aaKnown RBP11.92□□□□□ -0.5
SNX1-212ENST00000560861 OGDHQ02218 1023 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 FPGSQ05932 587 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 FUT10Q6P4F1 479 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 OLFML1Q6UWY5 402 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 CLEC20AQ6ZU45 233 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 TMCO2Q7Z6W1 182 aaPredicted RBP11.92□□□□□ -0.5
SNX1-212ENST00000560861 DAAM2Q86T65 1068 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 JOSD2Q8TAC2 188 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 UBE2Q2Q8WVN8 375 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 KCTD13Q8WZ19 329 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 BADQ92934 168 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 KHSRPQ92945 711 aaKnown RBP eCLIP11.92□□□□□ -0.52e-11■■□□□ 13.9
SNX1-212ENST00000560861 MYLPFQ96A32 169 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 PCED1BQ96HM7 432 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 BTBD6Q96KE9 485 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 HSFY1Q96LI6 401 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 TMEM209Q96SK2 561 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 OSBPL9Q96SU4 736 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 SMOQ99835 787 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 ZCWPW1Q9H0M4 648 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 MRPL47Q9HD33 250 aaKnown RBP11.92□□□□□ -0.5
SNX1-212ENST00000560861 ANAPC7Q9UJX3 599 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 HYOU1Q9Y4L1 999 aa11.92□□□□□ -0.5
SNX1-212ENST00000560861 HHLA1C9JL84 531 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 PAPSS1O43252 624 aaPredicted RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 TRAPPC3O43617 180 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 TADA2AO75478 443 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 BEST1O76090 585 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 UPP2O95045 317 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 CTNNA2P26232 953 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 SCNN1AP37088 669 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 PBX3P40426 434 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 RGS7P49802 495 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 PEX5P50542 639 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 CACNA2D1P54289 1103 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 HTRA4P83105 476 aaPredicted RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 TAP1Q03518 808 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 YWHAHQ04917 246 aaPredicted RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 ELAVL2Q12926 359 aaKnown RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 WHAMMP3Q1A5X7 153 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 VARS2Q5ST30 1063 aaKnown RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 TMEM240Q5SV17 173 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 TRNP1Q6NT89 227 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 DNAJC24Q6P3W2 148 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 FAM183BPQ6ZVS7 135 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 ZNF365Q70YC5 407 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 ZNF572Q7Z3I7 529 aaPredicted RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 PEX26Q7Z412 305 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 PIGZQ86VD9 579 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 CREG2Q8IUH2 290 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 SLC39A11Q8N1S5 342 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 NIPA2Q8N8Q9 360 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 MSANTD4Q8NCY6 345 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 LRRN4CLQ8ND94 238 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 IPO4Q8TEX9 1081 aaKnown RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 FNIP1Q8TF40 1166 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 COG1Q8WTW3 980 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 PIWIL1Q96J94 861 aaKnown RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 UBXN6Q9BZV1 441 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 CSNK1G1Q9HCP0 422 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 TMEM59LQ9UK28 342 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 PACSIN2Q9UNF0 486 aaPredicted RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 SAR1BQ9Y6B6 198 aa11.91□□□□□ -0.5
SNX1-212ENST00000560861 MRPL42Q9Y6G3 142 aaKnown RBP11.91□□□□□ -0.5
SNX1-212ENST00000560861 SF3B1O75533 1304 aaKnown RBP eCLIP11.9□□□□□ -0.5
SNX1-212ENST00000560861 NT5C1B-RDH14C9J2C7 533 aa11.9□□□□□ -0.5
SNX1-212ENST00000560861 PDE2AO00408 941 aaPredicted RBP11.9□□□□□ -0.5
SNX1-212ENST00000560861 CES2O00748 559 aa11.9□□□□□ -0.5
SNX1-212ENST00000560861 CEP290O15078 2479 aa11.9□□□□□ -0.5
SNX1-212ENST00000560861 SRGAP2O75044 1071 aa11.9□□□□□ -0.5
SNX1-212ENST00000560861 FGBP02675 491 aa11.9□□□□□ -0.5
SNX1-212ENST00000560861 TCP1P17987 556 aaKnown RBP11.9□□□□□ -0.5
SNX1-212ENST00000560861 COMTP21964 271 aa11.9□□□□□ -0.5
SNX1-212ENST00000560861 RFC1P35251 1148 aaPredicted RBP11.9□□□□□ -0.5
SNX1-212ENST00000560861 MARCKSL1P49006 195 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms