RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 LMNAP02545 664 aaKnown RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 GNL1P36915 607 aaPredicted RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 SYKP43405 635 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 SNRPFP62306 86 aaKnown RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 RPL10AP62906 217 aaKnown RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 ZXDBP98169 803 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 DPYDQ12882 1025 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 ORC1Q13415 861 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 ARHGAP29Q52LW3 1261 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 PKN3Q6P5Z2 889 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 MON1AQ86VX9 555 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 CELF5Q8N6W0 485 aaKnown RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 ARL14EPQ8N8R7 260 aaPredicted RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 SUMF1Q8NBK3 374 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 TTC16Q8NEE8 873 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 SPATA18Q8TC71 538 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 NELL1Q92832 810 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 MYRFLQ96LU7 910 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 FAM83CQ9BQN1 747 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 B3GNT5Q9BYG0 378 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 ZNF518BQ9C0D4 1074 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 EBF3Q9H4W6 596 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 POLR3BQ9NW08 1133 aaPredicted RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 FBXO4Q9UKT5 387 aa18.95■□□□□ 0.62
HDDC3-205ENST00000559898 MRPS17Q9Y2R5 130 aaKnown RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 PTPRZ1P23471 2315 aaPredicted RBP18.95■□□□□ 0.62
HDDC3-205ENST00000559898 NR3C1P04150 777 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 PTPN1P18031 435 aaKnown RBP18.94■□□□□ 0.62
HDDC3-205ENST00000559898 SPOPLQ6IQ16 392 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 MYCBPAPQ8TBZ2 947 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 TRMT2BQ96GJ1 504 aaKnown RBP18.94■□□□□ 0.62
HDDC3-205ENST00000559898 FUBP3Q96I24 572 aaKnown RBP eCLIP18.94■□□□□ 0.62
HDDC3-205ENST00000559898 SNX25Q9H3E2 840 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 FBRSL1Q9HCM7 1045 aaKnown RBP18.94■□□□□ 0.62
HDDC3-205ENST00000559898 TDP1Q9NUW8 608 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 GCNT4Q9P109 453 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 R3HCC1Q9Y3T6 440 aaKnown RBP18.94■□□□□ 0.62
HDDC3-205ENST00000559898 MYO16Q9Y6X6 1858 aa18.94■□□□□ 0.62
HDDC3-205ENST00000559898 DMXL1Q9Y485 3027 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 ANTXRLA6NF34 631 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 F8VP50 259 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 NCAM2O15394 837 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 TACC1O75410 805 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 AVPR1AP37288 418 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 GRIK1P39086 918 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 MAGEA11P43364 429 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 TNNC1P63316 161 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 CLDN10P78369 228 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 TRPC3Q13507 836 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 KRBA2Q6ZNG9 492 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 PAQR9Q6ZVX9 377 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 SMYD4Q8IYR2 804 aaPredicted RBP18.93■□□□□ 0.62
HDDC3-205ENST00000559898 MRPS31Q92665 395 aaKnown RBP18.93■□□□□ 0.62
HDDC3-205ENST00000559898 CGNQ9P2M7 1197 aaKnown RBP18.93■□□□□ 0.62
HDDC3-205ENST00000559898 HMGXB4Q9UGU5 601 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 DCHS1Q96JQ0 3298 aa18.93■□□□□ 0.62
HDDC3-205ENST00000559898 ZNF292O60281 2723 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 PHACTR2O75167 634 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 MAGEA9P43362 315 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 PSMD2Q13200 908 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 BIRC3Q13489 604 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 NCOA4Q13772 614 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 ZNF77Q15935 545 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 ZNF528Q3MIS6 628 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 CEP135Q66GS9 1140 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 C4orf50Q6ZRC1 276 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 SLC9A9Q8IVB4 645 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 ZBTB44Q8NCP5 570 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 ERCC4Q92889 916 aaPredicted RBP18.92■□□□□ 0.62
HDDC3-205ENST00000559898 C8orf33Q9H7E9 229 aaPredicted RBP18.92■□□□□ 0.62
HDDC3-205ENST00000559898 WNT6Q9Y6F9 365 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 GPR179Q6PRD1 2367 aa18.92■□□□□ 0.62
HDDC3-205ENST00000559898 A8MXQ7 604 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 PDXKO00764 312 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 SCAMP3O14828 347 aaKnown RBP18.91■□□□□ 0.62
HDDC3-205ENST00000559898 LILRB5O75023 590 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 RHOBTB3O94955 611 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 ZNF202O95125 648 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 STAU1O95793 577 aaKnown RBP18.91■□□□□ 0.62
HDDC3-205ENST00000559898 TRIM49P0CI25 452 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 TRIM49CP0CI26 452 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 DDX6P26196 483 aaKnown RBP eCLIP18.91■□□□□ 0.62
HDDC3-205ENST00000559898 IFRD2Q12894 506 aaPredicted RBP18.91■□□□□ 0.62
HDDC3-205ENST00000559898 SRSF5Q13243 272 aaKnown RBP18.91■□□□□ 0.62
HDDC3-205ENST00000559898 RUNX3Q13761 415 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 ZNF699Q32M78 642 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 ITPRIPL2Q3MIP1 535 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 FSTL4Q6MZW2 842 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 EEF2KMTQ96G04 330 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 SPATA17Q96L03 361 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 KCNK16Q96T55 309 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 RNF38Q9H0F5 515 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 LINC00597Q9H2U6 94 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 ZSCAN32Q9NX65 697 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 USP25Q9UHP3 1055 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 GVINP1Q7Z2Y8 2422 aa18.91■□□□□ 0.62
HDDC3-205ENST00000559898 KIAA1549LQ6ZVL6 1849 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 OTOGLQ3ZCN5 2332 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 EP300Q09472 2414 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-205ENST00000559898 A0A1W2PQ27 194 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms