RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 OXCT2Q9BYC2 517 aaPredicted RBP12.88□□□□□ -0.35
HERC1-205ENST00000559886 OSGEPQ9NPF4 335 aa12.88□□□□□ -0.35
HERC1-205ENST00000559886 UVRAGQ9P2Y5 699 aa12.88□□□□□ -0.35
HERC1-205ENST00000559886 STRIP2Q9ULQ0 834 aa12.88□□□□□ -0.35
HERC1-205ENST00000559886 COG5Q9UP83 839 aa12.88□□□□□ -0.35
HERC1-205ENST00000559886 PCDHB12Q9Y5F1 795 aa12.88□□□□□ -0.35
HERC1-205ENST00000559886 CAPN6Q9Y6Q1 641 aa12.88□□□□□ -0.35
HERC1-205ENST00000559886 H7C4K7 107 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 SOD2P04179 222 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 FAM200BP0CF97 657 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 NPR3P17342 541 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 NOP2P46087 812 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 RPL34P49207 117 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 NAP1L1P55209 391 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 IFI16Q16666 785 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 C9orf50Q5SZB4 431 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 PLEKHA7Q6IQ23 1121 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 DCP1BQ8IZD4 617 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 TRIM58Q8NG06 486 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 C18orf8Q96DM3 657 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 CALR3Q96L12 384 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 WDR24Q96S15 920 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 CTTNBP2NLQ9P2B4 639 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 CHORDC1Q9UHD1 332 aaPredicted RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 PCDHGC5Q9Y5F6 944 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 PLXNA4Q9HCM2 1894 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 TCRBV5S1A1TA0A578 114 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 XPO1O14980 1071 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 ERBB2P04626 1255 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 PLA2G4AP47712 749 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 GSCP56915 257 aaPredicted RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 SLC8A3P57103 927 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 LLGL2Q6P1M3 1020 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 SYT10Q6XYQ8 523 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 CLEC20AQ6ZU45 233 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 TMEM110Q86TL2 294 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 DDX53Q86TM3 631 aaKnown RBP12.87□□□□□ -0.35
HERC1-205ENST00000559886 SLC35F6Q8N357 371 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 TPCN2Q8NHX9 752 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 PIK3R5Q8WYR1 880 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 SMARCD1Q96GM5 515 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 NUP85Q9BW27 656 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 CYLDQ9NQC7 956 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 ST7Q9NRC1 585 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 KRT82Q9NSB4 513 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 TJP2Q9UDY2 1190 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 PATJQ8NI35 1801 aa12.87□□□□□ -0.35
HERC1-205ENST00000559886 LCHNA4D1U4 455 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 GABBR2O75899 941 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 BEST1O76090 585 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 OR4Q2P0C623 313 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 CDR1P51861 262 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 MAMLD1Q13495 774 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 ZNF268Q14587 947 aaPredicted RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 SHHQ15465 462 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 NFE2Q16621 373 aaPredicted RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 SLC39A12Q504Y0 691 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 CYP4A22Q5TCH4 519 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 C4orf50Q6ZRC1 276 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 PHLDB2Q86SQ0 1253 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 IPO4Q8TEX9 1081 aaKnown RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 HSFY1Q96LI6 401 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 HERC2P3Q9BVR0 1158 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 MIS12Q9H081 205 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 SYNCQ9H7C4 482 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 CSNK1G1Q9HCP0 422 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 PARVAQ9NVD7 372 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 WDR35Q9P2L0 1181 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 DNAI1Q9UI46 699 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 SCINQ9Y6U3 715 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 GRID2IPA4D2P6 1211 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 E5RJQ4 531 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 FANCGO15287 622 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 AP1G2O75843 785 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 RGS7P49802 495 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 SNX16P57768 344 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 PRSS55Q6UWB4 352 aaPredicted RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 RSPO2Q6UXX9 243 aaPredicted RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 XYLT1Q86Y38 959 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 C3orf20Q8ND61 904 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 ZNF564Q8TBZ8 553 aaPredicted RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 RIN2Q8WYP3 895 aaPredicted RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 RNPC3Q96LT9 517 aaKnown RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 ALS2CR12Q96Q35 445 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 SMOQ99835 787 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 MRPL47Q9HD33 250 aaKnown RBP12.86□□□□□ -0.35
HERC1-205ENST00000559886 TMEM30AQ9NV96 361 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 MTRRQ9UBK8 725 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 STK39Q9UEW8 545 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 BACE2Q9Y5Z0 518 aa12.86□□□□□ -0.35
HERC1-205ENST00000559886 FGF18O76093 207 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 BDNFP23560 247 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 CACNA2D1P54289 1103 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 DSG1Q02413 1049 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 CFAP221Q4G0U5 840 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 KIAA1841Q6NSI8 718 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 PIGZQ86VD9 579 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 SPATA2LQ8IUW3 424 aaPredicted RBP12.85□□□□□ -0.35
HERC1-205ENST00000559886 LRRC57Q8N9N7 239 aa12.85□□□□□ -0.35
HERC1-205ENST00000559886 ZMIZ2Q8NF64 920 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms