RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RITA1Q96K30 269 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 WACQ9BTA9 647 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 SARS2Q9NP81 518 aaKnown RBP5.8□□□□□ -1.48
VPS13C-208ENST00000559119 NDRG4Q9ULP0 352 aaKnown RBP5.8□□□□□ -1.48
VPS13C-208ENST00000559119 SHOC2Q9UQ13 582 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 POC1B-GALNT4F8VUJ3 575 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 EXOC3O60645 756 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 NTN1O95631 604 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 IL33O95760 270 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 PLS1Q14651 629 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 FCRL6Q6DN72 434 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 MTHFD1LQ6UB35 978 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 CATIPQ7Z7H3 387 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 GALNT4Q8N4A0 578 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 SLC35A4Q96G79 324 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 TMEM79Q9BSE2 394 aa5.79□□□□□ -1.48
VPS13C-208ENST00000559119 UBE2Q2LH0YL09 131 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 USP1O94782 785 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 TJP3O95049 919 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 PDE8BO95263 885 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 VIPR2P41587 438 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 NKX6-1P78426 367 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-208ENST00000559119 AMPD3Q01432 767 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 ZNF260Q3ZCT1 412 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 KHDC1LQ5JSQ8 128 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 L1TD1Q5T7N2 865 aaKnown RBP5.78□□□□□ -1.48
VPS13C-208ENST00000559119 KIRREL2Q6UWL6 708 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 SERPINA13PQ6UXR4 307 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 TERB1Q8NA31 727 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 MTFMTQ96DP5 389 aaKnown RBP5.78□□□□□ -1.48
VPS13C-208ENST00000559119 DPCDQ9BVM2 203 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-208ENST00000559119 PCDHA6Q9UN73 950 aa5.78□□□□□ -1.48
VPS13C-208ENST00000559119 ERC2O15083 957 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 CHRM5P08912 532 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-208ENST00000559119 LRPAP1P30533 357 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 PDE6CP51160 858 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 FOXG1P55316 489 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-208ENST00000559119 TMEM240Q5SV17 173 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 DEPDC1Q5TB30 811 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 KRT73Q86Y46 540 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 SLC15A3Q8IY34 581 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 NANOGP1Q8N7R0 232 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 CDK5RAP3Q96JB5 506 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 SNX18Q96RF0 628 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 FAM118BQ9BPY3 351 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 ASPSCR1Q9BZE9 553 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 TRNAU1APQ9NX07 287 aaKnown RBP5.77□□□□□ -1.49
VPS13C-208ENST00000559119 TFCP2L1Q9NZI6 479 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 KLHL13Q9P2N7 655 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 XPR1Q9UBH6 696 aa5.77□□□□□ -1.49
VPS13C-208ENST00000559119 hCG_1984214I3L0E3 225 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 BCAR3O75815 825 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 PRKCBP05771 671 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 IL1R2P27930 398 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 Q4G0T1 1027 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 ZNF517Q6ZMY9 492 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-208ENST00000559119 OSCP1Q8WVF1 389 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 SOCS4Q8WXH5 440 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 HSPBAP1Q96EW2 488 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 MVB12AQ96EY5 273 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 GTPBP4Q9BZE4 634 aaKnown RBP5.76□□□□□ -1.49
VPS13C-208ENST00000559119 CIPCQ9C0C6 399 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 CNNM1Q9NRU3 951 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 MRPS17Q9Y2R5 130 aaKnown RBP5.76□□□□□ -1.49
VPS13C-208ENST00000559119 TMX2Q9Y320 296 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS13C-208ENST00000559119 SBNO2Q9Y2G9 1366 aa5.76□□□□□ -1.49
VPS13C-208ENST00000559119 MYMKA6NI61 221 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 MYO1CO00159 1063 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 SNHG28P0DPA3 235 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 CYP2A6P11509 494 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-208ENST00000559119 CYP2C9P11712 490 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 RENBPP51606 427 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 KRT17Q04695 432 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 MYO1EQ12965 1108 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 LRRC41Q15345 812 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 MRPL10Q7Z7H8 261 aaKnown RBP5.75□□□□□ -1.49
VPS13C-208ENST00000559119 LENG8Q96PV6 779 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-208ENST00000559119 THAP7Q9BT49 309 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-208ENST00000559119 TRMT13Q9NUP7 481 aaKnown RBP5.75□□□□□ -1.49
VPS13C-208ENST00000559119 GABRQQ9UN88 632 aa5.75□□□□□ -1.49
VPS13C-208ENST00000559119 LUC7L2Q9Y383 392 aaKnown RBP5.75□□□□□ -1.49
VPS13C-208ENST00000559119 E5RJQ4 531 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 SOCS2O14508 198 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 INSIG1O15503 277 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 XRCC6P12956 609 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS13C-208ENST00000559119 ATP5F1P24539 256 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-208ENST00000559119 AKAP5P24588 427 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 ZNF268Q14587 947 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-208ENST00000559119 PIGOQ8TEQ8 1089 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 CPA4Q9UI42 421 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 SCAF8Q9UPN6 1271 aaKnown RBP5.74□□□□□ -1.49
VPS13C-208ENST00000559119 AFG3L2Q9Y4W6 797 aa5.74□□□□□ -1.49
VPS13C-208ENST00000559119 DSCR3O14972 297 aa5.73□□□□□ -1.49
VPS13C-208ENST00000559119 FGBP02675 491 aa5.73□□□□□ -1.49
VPS13C-208ENST00000559119 THP07101 528 aa5.73□□□□□ -1.49
VPS13C-208ENST00000559119 CSF1RP07333 972 aa5.73□□□□□ -1.49
VPS13C-208ENST00000559119 VCAM1P19320 739 aa5.73□□□□□ -1.49
VPS13C-208ENST00000559119 ADORA2AP29274 412 aa5.73□□□□□ -1.49
VPS13C-208ENST00000559119 TKTP29401 623 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms